def test_fit_lm_only(self):
"""
Ensure model training does not error out
Ensure model returns predictions
"""
raw_docs = ["".join(text) for text in self.texts]
texts, annotations = finetune_to_indico_sequence(raw_docs, self.texts, self.labels,
none_value=self.model.config.pad_token)
train_texts, test_texts, train_annotations, test_annotations = train_test_split(texts, annotations, test_size=0.1)
self.model.fit(train_texts)
self.model.fit(train_texts, train_annotations)
predictions = self.model.predict(test_texts)
probas = self.model.predict_proba(test_texts)
self.assertIsInstance(probas, list)
self.assertIsInstance(probas[0], list)
self.assertIsInstance(probas[0][0], dict)
self.assertIsInstance(probas[0][0]['confidence'], dict)
token_precision = sequence_labeling_token_precision(test_annotations, predictions)
token_recall = sequence_labeling_token_recall(test_annotations, predictions)
overlap_precision = sequence_labeling_overlap_precision(test_annotations, predictions)
overlap_recall = sequence_labeling_overlap_recall(test_annotations, predictions)
self.assertIn('Named Entity', token_precision)
self.assertIn('Named Entity', token_recall)
self.assertIn('Named Entity', overlap_precision)
self.assertIn('Named Entity', overlap_recall)
self.model.save(self.save_file)
model = SequenceLabeler.load(self.save_file)
predictions = model.predict(test_texts)
def test_fit_predict(self):
"""
Ensure model training does not error out
Ensure model returns predictions
Ensure class reweighting behaves as intended
"""
raw_docs = ["".join(text) for text in self.texts]
texts, annotations = finetune_to_indico_sequence(
raw_docs, self.texts, self.labels, none_value=self.model.config.pad_token
)
train_texts, test_texts, train_annotations, test_annotations = train_test_split(
texts, annotations, test_size=0.1
)
reweighted_model = SequenceLabeler(
**self.default_config(class_weights={"Named Entity": 100.0})
)
reweighted_model.fit(train_texts, train_annotations)
reweighted_predictions = reweighted_model.predict(test_texts)
reweighted_token_recall = sequence_labeling_token_recall(
test_annotations, reweighted_predictions
)
self.model.fit(train_texts, train_annotations)
predictions = self.model.predict(test_texts)
probas = self.model.predict_proba(test_texts)
self.assertIsInstance(probas, list)
self.assertIsInstance(probas[0], list)
self.assertIsInstance(probas[0][0], dict)
self.assertIsInstance(probas[0][0]["confidence"], dict)
token_precision = sequence_labeling_token_precision(
test_annotations, predictions
)
token_recall = sequence_labeling_token_recall(test_annotations, predictions)
overlap_precision = sequence_labeling_overlap_precision(
test_annotations, predictions
)
overlap_recall = sequence_labeling_overlap_recall(test_annotations, predictions)
self.assertIn("Named Entity", token_precision)
self.assertIn("Named Entity", token_recall)
self.assertIn("Named Entity", overlap_precision)
self.assertIn("Named Entity", overlap_recall)
self.model.save(self.save_file)
self.assertGreater(
reweighted_token_recall["Named Entity"], token_recall["Named Entity"]
)
def _evaluate_sequence_preds(self, preds, includes_context):
token_precision = sequence_labeling_token_precision(
self.trainY_seq, preds)
token_recall = sequence_labeling_token_recall(self.trainY_seq, preds)
self.assertIn("IMPORTANT", token_precision)
self.assertIn("IMPORTANT", token_recall)
token_precision = np.mean(list(token_precision.values()))
token_recall = np.mean(list(token_recall.values()))
if includes_context:
self.assertEqual(token_precision, 1.0)
self.assertEqual(token_recall, 1.0)
else:
self.assertLessEqual(token_precision, 1.0)
self.assertLessEqual(token_recall, 1.0)
def test_auxiliary_sequence_labeler(self):
"""
Ensure model training does not error out
Ensure model returns reasonable predictions
"""
(trainX, testX, trainY, testY) = self.dataset
model = SequenceLabeler(**self.default_config())
model.fit(trainX, trainY)
preds = model.predict(testX)
token_precision = sequence_labeling_token_precision(preds, testY)
token_recall = sequence_labeling_token_recall(preds, testY)
self.assertIn("Named Entity", token_precision)
self.assertIn("Named Entity", token_recall)
token_precision = np.mean(list(token_precision.values()))
token_recall = np.mean(list(token_recall.values()))
self.assertGreater(token_precision, 0.6)
self.assertGreater(token_recall, 0.6)