def clone(self, to_namespace, to_name):
"""Clone this workspace.
Args:
to_namespace (str): Target workspace namespace
to_name (str): Target workspace name
"""
r = fapi.clone_workspace(self.namespace, self.name,
to_namespace, to_name, self.api_url)
fapi._check_response_code(r, 201)
return Workspace(to_namespace, to_name, self.api_url)
def test_clone_workspace(self):
"""Test clone_workspace()."""
temp_space = getuser() + '_FISS_TEST_CLONE'
r = fapi.unlock_workspace(self.project, temp_space)
r = fapi.delete_workspace(self.project, temp_space)
r = fapi.clone_workspace(self.project, self.workspace, self.project,
temp_space)
print(r.status_code, r.content)
self.assertEqual(r.status_code, 201)
# Compare new workspace and old workspace
# Cleanup, Delete workspace
r = fapi.delete_workspace(self.project, temp_space)
print(r.status_code, r.content)
self.assertIn(r.status_code, [200, 202])
def clone_workspace(src_namespace,
src_workspace,
dest_namespace,
dest_workspace,
auth_domains,
copyFilesWithPrefix=None):
"""Clone a Terra workspace."""
workspace = fapi.clone_workspace(src_namespace, src_workspace,
dest_namespace, dest_workspace,
auth_domains, copyFilesWithPrefix)
workspace_json = workspace.json()
# workspace clone fails
if workspace.status_code != 201:
print("Workspace clone failed. Please see below for full error.")
print(workspace_json)
return False, workspace_json
print(f"Cloned workspace: {dest_namespace}/{dest_workspace}")
return True, workspace_json
def hard_copy(original_workspace,
original_project,
new_workspace,
new_project,
set_auth_domain=None):
# try:
# check for auth_domain info
if set_auth_domain is None:
response = fapi.get_workspace(namespace=original_project,
workspace=original_workspace)
if response.status_code not in [200]:
raise ferrors.FireCloudServerError(response.status_code,
response.content)
authorization_domain = response.json(
)['workspace']['authorizationDomain']
if len(authorization_domain) > 0:
authorization_domain = authorization_domain[0]['membersGroupName']
else:
authorization_domain = set_auth_domain
print(f'Setting authorization domain to {authorization_domain}')
# clone the workspace
response = fapi.clone_workspace(from_namespace=original_project,
from_workspace=original_workspace,
to_namespace=new_project,
to_workspace=new_workspace,
authorizationDomain=authorization_domain)
if response.status_code in [409]:
print(f'\nNOTE: {new_project}/{new_workspace} already exists!')
return 'already exists'
elif response.status_code not in [201]:
raise ferrors.FireCloudServerError(response.status_code,
response.content)
# get bucket info for original and new workspace
original_bucket = fapi.get_workspace(
original_project, original_workspace).json()['workspace']['bucketName']
new_bucket = fapi.get_workspace(
new_project, new_workspace).json()['workspace']['bucketName']
# copy bucket over
bucket_files = run_subprocess(
['gsutil', 'ls', 'gs://' + original_bucket + '/'],
'Error listing bucket contents')
if len(bucket_files) > 0:
gsutil_args = [
'gsutil', '-m', 'rsync', '-r', 'gs://' + original_bucket,
'gs://' + new_bucket
]
bucket_files = run_subprocess(
gsutil_args, 'Error copying over original bucket to clone bucket')
# update data references
update_attributes(new_workspace,
new_project,
replace_this=original_bucket,
with_this=new_bucket)
update_entities(new_workspace,
new_project,
replace_this=original_bucket,
with_this=new_bucket)
update_notebooks(new_workspace,
new_project,
replace_this=original_bucket,
with_this=new_bucket)
# done
print(
f'\nFinished copying {original_project}/{original_workspace} to {new_project}/{new_workspace}.\nCheck it out at https://app.terra.bio/#workspaces/{new_project}/{new_workspace}'
)
return 'copy successful'