def register():
"""Returns the registered user with token if success. """
data = MultiDict(dict(**request.json))
form = RegisterForm(data, csrf_enabled=False)
if form.validate():
# Check if email is used.
if users.first(email=form.email.data):
raise LadyMarryError(
'Email %s is already registered.' % form.email.data)
# TODO: Clean up this logic.
if form.wedding_date.data:
user = users.register_user(email=form.email.data,
password=form.password.data,
first_name=form.first_name.data,
last_name=form.last_name.data,
wedding_date=form.wedding_date.data)
schedulers.schedule_tasks(user)
else:
user = users.register_user(email=form.email.data,
password=form.password.data,
first_name=form.first_name.data,
last_name=form.last_name.data,
wedding_date=form.wedding_date.data)
# Generate JWT token for this user.
user.token = generate_token(user)
return user
else:
logger.info('Register fail: %s', form.errors)
raise LadyMarryFormError(form.errors)
def test_create_model_test(testapp, db, user):
headers = gen_auth_header(generate_token(user))
model = create_test_mlmodel(
user, {
'duration': 549,
'scatterplot': 'ridge_scatterplot.png',
'weightmap': 'ridge_weightmap.nii.gz'
})
db.session.add(model)
db.session.commit()
put_weighmap_file(model.id, 'ridge_weightmap.nii.gz')
payload = {
'modelId': model.id,
'name': 'Model Test',
'selectedImages': {
504: [7513, 7516, 7573]
}
}
response = testapp.post_json('/api/tests', payload, headers=headers)
assert response.status_code == 201
modeltest = ModelTest.query.get(1)
assert modeltest.state == ModelTest.STATE_SUCCESS
assert modeltest.output_data['collections'] == {
'504': {
'id': 504,
'name': 'Single Subject Thermal Pain'
}
}
def test_create_masked_mlmodel(testapp, user):
name = 'Test %s' % uuid.uuid4()
headers = gen_auth_header(generate_token(user))
payload = {
'algorithm': nv_test_data.ALGORITHM,
'data': nv_test_data.TARGET_DATA_IMG_IDS,
'collections': {
504: {
'name': 'Single Subject Thermal Pain'
}
},
'cv': {
'type': 'kfolds',
'value': '10'
},
'label': {
'name': 'PainLevel',
'index': 13
},
'mask': {
'id': 18650
},
'name': name
}
response = testapp.post_json('/api/models', payload, headers=headers)
assert response.status_code == 201
model = MLModel.query.filter_by(name=name).first()
assert model.training_state == MLModel.STATE_SUCCESS
def post(self, username):
"""Hello Users."""
args = self.wanted.parse_args()
user = User.query.filter(User.username == username).first()
if user and user.check_password(args['password']):
return {'status': 200, 'message': generate_token(user)}
return {'status': 404, 'message': 'Not Found'}, 404
def test_create_masked_mlmodel(testapp, user):
name = 'Test %s' % uuid.uuid4()
headers = gen_auth_header(generate_token(user))
payload = {
'algorithm': nv_test_data.ALGORITHM,
'data': nv_test_data.TARGET_DATA_IMG_IDS,
'collections': {
504: {
'name': 'Single Subject Thermal Pain'
}
},
'cv': {
'type': 'kfolds',
'value': '10'
},
'label': {
'name': 'PainLevel',
'index': 13
},
'mask': {
'id': 18650
},
'name': name
}
response = testapp.post_json('/api/models',
payload,
headers=headers)
assert response.status_code == 201
model = MLModel.query.filter_by(name=name).first()
assert model.training_state == MLModel.STATE_SUCCESS
def test_create_model_test(testapp, db, user):
headers = gen_auth_header(generate_token(user))
model = create_test_mlmodel(user, {
'duration': 549,
'scatterplot': 'ridge_scatterplot.png',
'weightmap': 'ridge_weightmap.nii.gz'
})
db.session.add(model)
db.session.commit()
put_weighmap_file(model.id, 'ridge_weightmap.nii.gz')
payload = {
'modelId': model.id,
'name': 'Model Test',
'selectedImages': {
504: [7513, 7516, 7573]
}
}
response = testapp.post_json('/api/tests',
payload,
headers=headers)
assert response.status_code == 201
modeltest = ModelTest.query.get(1)
assert modeltest.state == ModelTest.STATE_SUCCESS
assert modeltest.output_data['collections'] == {
'504': {'id': 504, 'name': 'Single Subject Thermal Pain'}}
def authorized():
# Patch for proxy
if current_app.debug:
session['neurovault_oauthredir'] = 'http://localhost:3000/signin/authorized'
else:
session['neurovault_oauthredir'] = url_for('.authorized',
_external=True)
oauth_client = oauth.remote_apps['neurovault']
resp = oauth_client.authorized_response()
if resp is None:
return 'Access denied: reason=%s error=%s' % (
request.args['error'],
request.args['error_description']
)
if isinstance(resp, OAuthException):
return 'Access denied: reason=%s error=%s' % (
resp.message,
resp.data
)
session['neurovault_oauth_token'] = (resp['access_token'], '')
user_data = get_external_user_data(oauth_client)
try:
connection = find_connection(Connection.NEUROVAULT,
unicode(user_data['id']))
except NoResultFound:
user = create_user(user_data)
db.session.add(user)
db.session.commit()
connection = create_connection(Connection.NEUROVAULT,
user, user_data)
db.session.add(connection)
db.session.commit()
connection.access_token = resp['access_token']
connection.refresh_token = resp['refresh_token']
db.session.commit()
return render_template('authorized.html',
token=generate_token(connection.user))
def create_user():
try:
json = request.json
if json is None:
raise InvalidUsage('payload is empty or Mime is not JSON')
username = json['username']
password = json['password']
email = json['email']
if username in [None, ""] or email in [None, ""
] or password in [None, ""]:
raise InvalidUsage('Empty required arguments', 400)
if not isinstance(username, basestring) or \
not isinstance(email, basestring) or \
not isinstance(password, basestring):
raise InvalidUsage('username, email and password must be strings',
400)
username = username.lower()
email = email.lower()
if User.query.filter_by(name=username).first() is not None:
raise InvalidUsage('User already exists', 400)
if User.query.filter_by(email=email).first() is not None:
raise InvalidUsage('Email already exists', 400)
user = User(name=username, email=email, password=password)
db.session.add(user)
db.session.commit()
return jsonify(
{'token': generate_token(authenticate(email, password))}), 201
except KeyError as e:
raise InvalidUsage(
'Missing required arguments ({0})'.format(e.message), 400)
except werkzeug_exceptions.BadRequest as e:
raise InvalidUsage('payload is not a valid JSON')
except Exception as e:
raise InvalidUsage(
'Something bad happened. Please blame Kadi for this ({0})'.format(
e.message), 500)
def test_create_neurovault_image_test(testapp, db, user):
headers = gen_auth_header(generate_token(user))
payload = {
'neurovaultImageId': 43943,
'name': 'Neurovault Image Test',
'selectedImages': {
504: [7513, 7516, 7573]
}
}
response = testapp.post_json('/api/tests',
payload,
headers=headers)
assert response.status_code == 201
modeltest = ModelTest.query.get(1)
assert modeltest.state == ModelTest.STATE_SUCCESS
assert modeltest.output_data['collections'] == {
'504': {'id': 504, 'name': 'Single Subject Thermal Pain'}}
def test_create_neurovault_image_test(testapp, db, user):
headers = gen_auth_header(generate_token(user))
payload = {
'neurovaultImageId': 43943,
'name': 'Neurovault Image Test',
'selectedImages': {
504: [7513, 7516, 7573]
}
}
response = testapp.post_json('/api/tests', payload, headers=headers)
assert response.status_code == 201
modeltest = ModelTest.query.get(1)
assert modeltest.state == ModelTest.STATE_SUCCESS
assert modeltest.output_data['collections'] == {
'504': {
'id': 504,
'name': 'Single Subject Thermal Pain'
}
}
def create_user():
try:
json = request.json
if json is None:
raise InvalidUsage("payload is empty or Mime is not JSON")
username = json["username"]
password = json["password"]
email = json["email"]
if username in [None, ""] or email in [None, ""] or password in [None, ""]:
raise InvalidUsage("Empty required arguments", 400)
if (
not isinstance(username, basestring)
or not isinstance(email, basestring)
or not isinstance(password, basestring)
):
raise InvalidUsage("username, email and password must be strings", 400)
username = username.lower()
email = email.lower()
if User.query.filter_by(name=username).first() is not None:
raise InvalidUsage("User already exists", 400)
if User.query.filter_by(email=email).first() is not None:
raise InvalidUsage("Email already exists", 400)
user = User(name=username, email=email, password=password)
db.session.add(user)
db.session.commit()
return jsonify({"token": generate_token(authenticate(email, password))}), 201
except KeyError as e:
raise InvalidUsage("Missing required arguments ({0})".format(e.message), 400)
except werkzeug_exceptions.BadRequest as e:
raise InvalidUsage("payload is not a valid JSON")
except Exception as e:
raise InvalidUsage("Something bad happened. Please blame Kadi for this ({0})".format(e.message), 500)
def test_generate_token(user, jwt, app):
with app.test_request_context():
token = flask_jwt.generate_token(user)
assert token == jwt.encode_callback(jwt.payload_callback(user))
def token(user):
"""Returns a JWT"""
return generate_token(user)