def get(self, user_id):
"""Get user details"""
try:
user = User.get(id=user_id)
except User.DoesNotExist:
abort(404, message='User not found')
return user
def get(self, import_id, citizen_id):
citizen = Citizen.query.get((citizen_id, import_id))
if not citizen:
abort(HTTPStatus.BAD_REQUEST)
return citizen
def patch(self, import_id, citizen_id):
#TODO Проверять, существуют ли указанные relatives
update_data = request.json
update_data["import_id"] = import_id
update_data["citizen_id"] = citizen_id
if "relatives" in update_data:
for id in update_data["relatives"]:
item = Citizen.query.get((id, import_id))
if not item:
abort(HTTPStatus.BAD_REQUEST)
update_data = CitizenPatchSchema().load(update_data)
citizen = Citizen.query.get((citizen_id, import_id))
has_changes = False
for field_name in ["name", "gender", "birth_date", "as_left_edges", "as_right_edges", "town", "street", "building", "apartment"]:
if hasattr(update_data, field_name):
has_changes = True
setattr(citizen, field_name, getattr(update_data, field_name))
if not has_changes:
abort(HTTPStatus.BAD_REQUEST)
db.session.commit()
return citizen
def get(self, import_id):
import_instance = Import.query.get(import_id)
if not import_instance:
abort(HTTPStatus.BAD_REQUEST)
data = {
"1":[],
"2":[],
"3":[],
"4":[],
"5":[],
"6":[],
"7":[],
"8":[],
"9":[],
"10":[],
"11":[],
"12":[]
}
for citizen in import_instance.citizens:
birth_month = str(citizen.birth_date.month)
presents = len(citizen.as_left_edges) + len(citizen.as_right_edges)
data[birth_month].append({"citizen_id": citizen.citizen_id, "presents": presents})
return jsonify({
"data": data
})
def get(self):
"""Get user details"""
try:
user = User.get(email=get_jwt_identity())
except User.DoesNotExist:
abort(404, message='User not found')
return user
def delete(self, user_id):
try:
user = User.get(id=user_id)
except User.DoesNotExist:
abort(404, message='User not found')
user.delete_instance()
return user
def get(self, import_id):
import_instance = Import.query.get(import_id)
if not import_instance:
abort(HTTPStatus.BAD_REQUEST)
return import_instance.citizens
def get(self, pk) -> BaseQuery:
if not self.get_enabled:
abort(405)
item = self._lookup(pk)
self._check_can_read(item)
return item
def delete(self, role_id):
"""Remove role"""
try:
role = Role.get(id=role_id)
except Role.DoesNotExist:
abort(404, message='Role not found')
role.delete_instance()
return role
def get(self, role_id):
"""Get role details"""
try:
role = Role.get(id=role_id)
except Role.DoesNotExist:
abort(404, message='Role not found')
role.users = [user.user for user in role.users]
return role
def delete(self, pk) -> BaseQuery:
if not self.delete_enabled:
abort(405)
item = self._lookup(pk)
self._check_can_write(item)
self._db.session.delete(item)
self._db.session.commit()
def get(self, id):
"""Get information on workflow by workflow id"""
try:
return db.session.query(WorkflowExecution)\
.filter(WorkflowExecution.fargateTaskArn==id)\
.filter(WorkflowExecution.workgroup.in_(get_jwt_groups()))\
.one()
except sqlalchemy.orm.exc.NoResultFound:
abort(404)
def get(self, category_id):
"""
Get category by id
"""
category = Category.query.get(category_id)
if not category:
abort(404, message='Category not found')
return category
def get(self) -> BaseQuery:
"""List collection."""
if not self.list_enabled:
abort(405)
query = self.query_for_user()
query = self._add_prefetch(query)
return query
def patch(self, args, role_id):
"""Edit role"""
try:
role = Role.get(id=role_id)
except Role.DoesNotExist:
abort(404, message='Role not found')
for field in args:
setattr(role, field, args[field])
role.save()
return role
def get(self, import_id):
import_instance = Import.query.get(import_id)
if not import_instance:
abort(HTTPStatus.BAD_REQUEST)
towns = {}
for citizen in import_instance.citizens:
if citizen.town in towns:
towns[citizen.town].append(citizen)
else:
towns[citizen.town] = [citizen]
data = []
now = datetime.utcnow()
for town, citizens in towns.items():
ages = []
for citizen in citizens:
yearsdelta = now.year - citizen.birth_date.year
monthdelta = now.month - citizen.birth_date.month
daysdelta = now.day - citizen.birth_date.day
age = 0
if now.month > citizen.birth_date.month:
age = yearsdelta
elif now.month < citizen.birth_date.month:
age = yearsdelta - 1
elif now.day >= citizen.birth_date.day:
age = yearsdelta
else:
age = yearsdelta - 1
ages.append(age)
p50 = percentile(ages, 50)
p75 = percentile(ages, 75)
p99 = percentile(ages, 99)
data.append({
"town": town,
"p50": p50,
"p75": p75,
"p99": p99
})
ages = []
return jsonify({
"data": data
})
def patch(self, args, user_id):
try:
user = User.get(id=user_id)
except User.DoesNotExist:
abort(404, message='User not found')
for field in args:
setattr(user, field, args[field])
if 'password' in args:
user.password = hash_password(user.password)
user.save()
return user
def get(self, product_id):
"""
Get product by id
"""
product = Product.query.get(product_id)
if not product:
abort(404, message='Product not found')
product.views += 1
db.session.commit()
return product
def delete(self, category_id):
"""
Delete empty category
"""
category = Category.query.get(category_id)
if not category:
abort(404, message='Category not found')
if category.products_count > 0:
abort(405, message='Category non empty')
db.session.delete(category)
db.session.commit()
def delete(self, product_id):
"""
Delete product
"""
product = Product.query.get(product_id)
if not product:
abort(404, message='Product not found')
if product.owner_id != flask_praetorian.current_user().user_id and \
flask_praetorian.current_user().role != 'admin':
abort(400, message='You are not owner of this product')
db.session.delete(product)
db.session.commit()
def post(self, args):
"""Register new user"""
email = args.get('email')
password = args.get('password')
try:
User.get(email=args.get('email'))
abort(409, message='User already registered')
except User.DoesNotExist:
user = User(email=email, password=hash_password(password))
user.active = False
user.save()
return user
def post(self, new_data):
"""
Register new user
"""
user = User.query.filter_by(username=new_data['username']).first()
if user:
abort(400, message='User with this username is already registered')
user = User(username=new_data['username'],
password=guard.encrypt_password(new_data['password']),
role='user')
db.session.add(user)
db.session.commit()
def patch(self, args=None, pk=None) -> BaseQuery:
if not self.update_enabled:
abort(405)
if not pk:
raise Exception("pk not passed to patch()")
item = self._lookup(pk)
self._check_can_write(item)
update_attrs(item, **args)
self._db.session.commit()
return item
def post(self, new_data):
"""
Add new product
"""
category = Category.query.get(new_data['category_id'])
if not category:
abort(400, message='Category not found')
product = Product(**new_data,
owner_id=flask_praetorian.current_user().user_id)
db.session.add(product)
db.session.commit()
return product
def post(self, args=None):
"""Create new model."""
if not self.create_enabled:
abort(405)
# create
item = self.model(**args)
# access check should be done in subclass (for now)
# self._check_can_create(item, args=args)
self._db.session.add(item)
self._db.session.commit()
return item
def get(self, id):
"""Get top level workflow logs"""
try:
db_res = db.session.query(WorkflowExecution)\
.filter(WorkflowExecution.fargateTaskArn==id)\
.filter(WorkflowExecution.workgroup.in_(get_jwt_groups()))\
.one()
except sqlalchemy.orm.exc.NoResultFound:
abort(404)
res = logs_client.get_log_events(
logGroupName=db_res.fargateLogGroupName,
logStreamName=db_res.fargateLogStreamName,
startFromHead=False)
return res
def get(self, id):
"""Get nextflow script for workflow"""
FILE = request.path.split("/")[-1]
try:
db_res = db.session.query(WorkflowExecution)\
.filter(WorkflowExecution.fargateTaskArn==id).one()
if FILE == "script":
s3_url = db_res.launchMetadata["workflow_loc"]
elif FILE == "config":
s3_url = db_res.launchMetadata["config_loc"]
elif FILE == "params":
s3_url = db_res.launchMetadata["params_loc"]
else:
abort(500)
except sqlalchemy.orm.exc.NoResultFound:
abort(404)
p = urllib.parse.urlparse(s3_url)
res = s3_client.get_object(Bucket=p.netloc, Key=p.path[1:])
return jsonify({"contents": res['Body'].read().decode('utf-8')})
def post(self):
"""Refresh access token"""
email = get_jwt_identity()
try:
user = User.get(email=email)
except User.DoesNotExist:
abort(403, message='No such user, or wrong password')
access_expire = current_app.config['JWT_ACCESS_TOKEN_EXPIRES']
access_token = create_access_token(identity=user.email)
refresh_expire_date = datetime.strptime(
request.cookies['refresh_expire'],
'%Y-%m-%d %H:%M:%S.%f'
)
refresh_delta = refresh_expire_date - datetime.now()
resp = jsonify(
{
'access': access_token,
'accessExpire': int(access_expire.total_seconds()),
'refreshExpire': int(refresh_delta.total_seconds()),
}
)
set_access_cookies(resp, access_token)
return resp
def post(self, args):
"""Authenticates and generates a token"""
email = args.get('email', None)
password = args.get('password', None)
if email is None:
abort(403, message='Email not provided')
try:
user = User.get(email=email)
except User.DoesNotExist:
abort(403, message='No such user, or wrong password')
if not user or not user.active:
abort(403, message='No such user, or wrong password')
if not verify_password(password, user.password):
abort(403, message='No such user, or wrong password')
access_token = create_access_token(identity=user.email)
refresh_token = create_refresh_token(identity=user.email)
access_expire = current_app.config['JWT_ACCESS_TOKEN_EXPIRES']
refresh_expire = current_app.config['JWT_REFRESH_TOKEN_EXPIRES']
resp = jsonify(
{
'access': access_token,
'refresh': refresh_token,
'accessExpire': int(access_expire.total_seconds()),
'refreshExpire': int(refresh_expire.total_seconds()),
}
)
set_access_cookies(resp, access_token)
set_refresh_cookies(resp, refresh_token)
refresh_path = current_app.config['JWT_REFRESH_COOKIE_PATH']
refresh_secure = current_app.config['JWT_COOKIE_SECURE']
refresh_expire_date = datetime.now() + refresh_expire
resp.set_cookie(
'refresh_expire',
value=str(refresh_expire_date),
expires=refresh_expire_date,
path=refresh_path,
httponly=True,
secure=refresh_secure,
)
return resp
def delete(self, role_id, user_id):
"""Remove user from role"""
try:
role = Role.get(id=role_id)
except Role.DoesNotExist:
abort(404, message='No such role')
try:
user = User.get(user_id)
except User.DoesNotExist:
abort(404, message='No such user')
for user in role.users:
if user.user.id == int(user_id):
user.delete_instance()
return user
abort(409, message='User not assigned to role')