def test_api(app, db):
taxonomy = current_flask_taxonomies.create_taxonomy("root",
extra_data={},
session=db.session)
db.session.commit()
identification = TermIdentification(taxonomy=taxonomy, slug="a")
term = current_flask_taxonomies.create_term(identification,
extra_data={"a": 1})
assert term.slug == "a"
db.session.commit()
identification2 = TermIdentification(parent=term, slug="b")
term2 = current_flask_taxonomies.create_term(identification2,
extra_data={"b": 2})
assert term2.slug == "a/b"
db.session.commit()
res = current_flask_taxonomies.list_taxonomies().all()
print(res)
# filter
term_identification = TermIdentification(taxonomy=taxonomy, slug=term.slug)
assert list(
current_flask_taxonomies.filter_term(term_identification)) == [term]
assert list(
current_flask_taxonomies.filter_term(
TermIdentification(taxonomy=taxonomy,
slug=term2.slug))) == [term2]
res_term = current_flask_taxonomies.filter_term(
term_identification).one_or_none()
assert isinstance(res_term, TaxonomyTerm)
def taxonomy_tree(app, db, taxonomy):
id1 = TermIdentification(taxonomy=taxonomy, slug="a")
term1 = current_flask_taxonomies.create_term(
id1, extra_data={"test": "extra_data"})
id2 = TermIdentification(parent=term1, slug="b")
term2 = current_flask_taxonomies.create_term(
id2, extra_data={"test": "extra_data"})
id3 = TermIdentification(taxonomy=taxonomy, slug="a/b/c")
term3 = current_flask_taxonomies.create_term(
id3, extra_data={"test": "extra_data"})
db.session.commit()
def create_update_terms(taxonomy,
taxonomy_data,
str_args: tuple = tuple(),
int_conversions: tuple = tuple(),
bool_args: tuple = tuple()):
stack = [taxonomy]
for term_dict in convert_data_to_dict(taxonomy_data, str_args=str_args,
int_conversions=int_conversions, bool_args=bool_args):
level = int(term_dict.pop('level'))
try:
slug = term_dict.pop('slug')
except KeyError:
slug = None
while level < len(stack):
stack.pop()
if not slug:
slug = slugify(term_dict["title"]["cs"])
else:
slug = slugify(slug)
last_stack = stack[-1]
if isinstance(last_stack, Taxonomy):
identification = TermIdentification(taxonomy=taxonomy, slug=slug)
else:
identification = TermIdentification(parent=last_stack, slug=slug)
term = current_flask_taxonomies.filter_term(identification).one_or_none()
if term:
current_flask_taxonomies.update_term(identification, extra_data=term_dict)
else:
term = current_flask_taxonomies.create_term(identification, extra_data=term_dict)
stack.append(term)
db.session.commit()
def import_countries(db):
# with db.session.begin_nested():
try:
Base.metadata.create_all(db.engine)
except:
pass
tax = current_flask_taxonomies.get_taxonomy(code='country', fail=False)
if tax:
return
tax = current_flask_taxonomies.create_taxonomy(
code='country',
extra_data={'title': 'List of countries'},
url='https://www.kaggle.com/nikitagrec/world-capitals-gps/data')
continents = {}
with open(os.path.join(os.path.dirname(__file__), 'countries.csv'),
'r') as f:
rdr = csv.DictReader(f)
for row in rdr:
try:
continent = row['ContinentName']
country = row['CountryCode']
if continent not in continents:
print('Creating continent', continent.lower())
continent_term = current_flask_taxonomies.create_term(
TermIdentification(taxonomy=tax,
slug=continent.lower().replace(
' ', '-')), )
continents[continent] = continent_term
slug = '%s/%s' % (continent.lower(), country.lower())
slug = slug.replace(' ', '-')
print('Importing', slug)
current_flask_taxonomies.create_term(TermIdentification(
taxonomy=tax, slug=slug),
extra_data=row)
except:
traceback.print_exc()
return
try:
db.session.commit()
except:
traceback.print_exc()
sys.exit(1)
def _taxonomy_create_term_internal(taxonomy,
slug=None,
term_path='',
extra_data=None,
move_target=None):
"""Create a Term inside a Taxonomy tree."""
if not slug:
abort(400, "No slug given for created element.")
try:
created = current_flask_taxonomies.create_term(taxonomy=taxonomy,
term_path=term_path,
slug=slug,
extra_data=extra_data)
created_dict = \
jsonify_taxonomy_term(created, taxonomy.code, created.tree_path)
response = jsonify(created_dict)
response.headers['Location'] = created_dict['links']['self']
response.status_code = 201
return response
except AttributeError as e:
abort(400, str(e))
except IntegrityError:
abort(400, 'Term with this slug already exists on this path.')
def taxonomy_tree(app, db, taxonomy):
# accessRights
id1 = TermIdentification(taxonomy=taxonomy, slug="c_abf2")
term1 = current_flask_taxonomies.create_term(
id1,
extra_data={
"title": {
"cs": "otevřený přístup",
"en": "open access"
},
"relatedURI": {
"coar": "http://purl.org/coar/access_right/c_abf2",
"vocabs":
"https://vocabs.acdh.oeaw.ac.at/archeaccessrestrictions/public",
"eprint": "http://purl.org/eprint/accessRights/OpenAccess"
}
})
# resource type
id2 = TermIdentification(taxonomy=taxonomy, slug="bakalarske_prace")
term2 = current_flask_taxonomies.create_term(id2,
extra_data={
"title": {
"cs":
"Bakalářské práce",
"en":
"Bachelor’s theses"
}
})
# institution
id3 = TermIdentification(taxonomy=taxonomy, slug="61384984")
term3 = current_flask_taxonomies.create_term(
id3,
extra_data={
"title": {
"cs": "Akademie múzických umění v Praze",
"en": "Academy of Performing Arts in Prague"
},
"type": "veřejná VŠ",
"aliases": ["AMU"],
"related": {
"rid": "51000"
},
"address": "Malostranské náměstí 259/12, 118 00 Praha 1",
"ico": "61384984",
"url": "https://www.amu.cz",
"provider": True,
})
# language
id4 = TermIdentification(taxonomy=taxonomy, slug="cze")
term4 = current_flask_taxonomies.create_term(
id4, extra_data={"title": {
"cs": "čeština",
"en": "Czech"
}})
# contributor
id5 = TermIdentification(taxonomy=taxonomy, slug="supervisor")
term5 = current_flask_taxonomies.create_term(id5,
extra_data={
"title": {
"cs": "supervizor",
"en": "supervisor"
},
"dataCiteCode":
"Supervisor"
})
# funder
id6 = TermIdentification(taxonomy=taxonomy, slug="ntk")
term6 = current_flask_taxonomies.create_term(
id6,
extra_data={
"title": {
"cs": "Národní technická knihovna",
"en": "National library of technology"
},
"funderISVaVaICode": "123456789"
})
# country
id7 = TermIdentification(taxonomy=taxonomy, slug="cz")
term7 = current_flask_taxonomies.create_term(id7,
extra_data={
"title": {
"cs": "Česko",
"en": "Czechia"
},
"code": {
"number": "203",
"alpha2": "CZ",
"alpha3": "CZE"
}
})
# relationship
id8 = TermIdentification(taxonomy=taxonomy, slug="isversionof")
term8 = current_flask_taxonomies.create_term(
id8, extra_data={"title": {
"cs": "jeVerzí",
"en": "isVersionOf"
}})
# rights
id9 = TermIdentification(taxonomy=taxonomy, slug="copyright")
term9 = current_flask_taxonomies.create_term(
id9,
extra_data={
"title": {
"cs":
"Dílo je chráněno podle autorského zákona č. 121/2000 Sb.",
"en":
"This work is protected under the Copyright Act No. 121/2000 Coll."
}
})
# series
id9 = TermIdentification(taxonomy=taxonomy, slug="maj")
term9 = current_flask_taxonomies.create_term(id9,
extra_data={
"name": "maj",
"volume": "1"
})
# subject
id10 = TermIdentification(taxonomy=taxonomy, slug="psh3001")
term10 = current_flask_taxonomies.create_term(
id10,
extra_data={
"title": {
"cs": "Reynoldsovo číslo",
"en": "Reynolds number"
},
"reletedURI": ["http://psh.techlib.cz/skos/PSH3001"],
"DateRevised": "2007-01-26T16:14:37"
})
id11 = TermIdentification(taxonomy=taxonomy, slug="psh3000")
term11 = current_flask_taxonomies.create_term(
id11,
extra_data={
"title": {
"cs": "turbulentní proudění",
"en": "turbulent flow"
},
"reletedURI": ["http://psh.techlib.cz/skos/PSH3000"],
"DateRevised": "2007-01-26T16:14:37"
})
id12 = TermIdentification(taxonomy=taxonomy, slug="D010420")
term12 = current_flask_taxonomies.create_term(
id12,
extra_data={
"title": {
"cs": "pentany",
"en": "Pentanes"
},
"reletedURI": [
"http://www.medvik.cz/link/D010420",
"http://id.nlm.nih.gov/mesh/D010420"
],
"DateRevised":
"2007-01-26T16:14:37",
"DateCreated":
"2007-01-26T16:14:37",
"DateDateEstablished":
"2007-01-26T16:14:37",
})
# studyField
id13 = TermIdentification(taxonomy=taxonomy,
slug="O_herectvi-alternativniho-divadla")
term13 = current_flask_taxonomies.create_term(
id13,
extra_data={
"title": {
"cs": "Herectví alternativního divadla",
},
"AKVO": "8203R082"
})
# conference
id14 = TermIdentification(taxonomy=taxonomy, slug="cze_conference")
term14 = current_flask_taxonomies.create_term(id14,
extra_data={
"title": {
"cs":
"Česká konference",
},
})
# certifying authority
id15 = TermIdentification(taxonomy=taxonomy, slug="mdcr")
term15 = current_flask_taxonomies.create_term(
id15,
extra_data={
"title": {
"cs": "Ministerstvo dopravy",
"en": "Ministry of transport"
},
})
# N_resultUsage
id16 = TermIdentification(taxonomy=taxonomy, slug="C")
term16 = current_flask_taxonomies.create_term(
id16,
extra_data={
"title": {
"cs": "Výsledek je užíván bez omezení okruhu uživatelů",
},
})
# N_resultUsage
id17 = TermIdentification(taxonomy=taxonomy, slug="A")
term17 = current_flask_taxonomies.create_term(
id17,
extra_data={
"title": {
"cs": "certifikovaná metodika (NmetC)",
},
})
db.session.commit()
def _create_update_taxonomy_term_internal(code,
slug,
prefer,
page,
size,
extra_data,
if_none_match=False,
if_match=False):
try:
taxonomy = current_flask_taxonomies.get_taxonomy(code)
prefer = taxonomy.merge_select(prefer)
if INCLUDE_DELETED in prefer:
status_cond = sqlalchemy.sql.true()
else:
status_cond = TaxonomyTerm.status == TermStatusEnum.alive
slug = '/'.join(slugify(x) for x in slug.split('/'))
ti = TermIdentification(taxonomy=code, slug=slug)
term = original_term = current_flask_taxonomies.filter_term(
ti, status_cond=sqlalchemy.sql.true()).one_or_none()
if term and INCLUDE_DELETED not in prefer:
if term.status != TermStatusEnum.alive:
term = None
if if_none_match and term:
json_abort(
412, {
'message':
'The taxonomy already contains a term on this slug. ' +
'As If-None-Match: \'*\' has been requested, not modifying the term',
'reason':
'term-exists'
})
if if_match and not term:
json_abort(
412, {
'message':
'The taxonomy does not contain a term on this slug. ' +
'As If-Match: \'*\' has been requested, not creating a new term',
'reason':
'term-does-not-exist'
})
if term:
current_flask_taxonomies.permissions.taxonomy_term_update.enforce(
request=request, taxonomy=taxonomy, term=term)
current_flask_taxonomies.update_term(term,
status_cond=status_cond,
extra_data=extra_data)
status_code = 200
else:
if original_term:
# there is a deleted term, so return a 409 Conflict
json_abort(
409, {
'message':
'The taxonomy already contains a deleted term on this slug. '
'To reuse the term, repeat the operation with `del` in '
'representation:include.',
'reason':
'deleted-term-exists'
})
current_flask_taxonomies.permissions.taxonomy_term_create.enforce(
request=request, taxonomy=taxonomy, slug=slug)
current_flask_taxonomies.create_term(ti, extra_data=extra_data)
status_code = 201
current_flask_taxonomies.commit()
return get_taxonomy_term(code=code,
slug=slug,
prefer=prefer,
page=page,
size=size,
status_code=status_code)
except NoResultFound:
json_abort(404, {})
except:
traceback.print_exc()
raise
def taxonomy_tree(app, db, taxonomy):
# accessRights
id1 = TermIdentification(taxonomy=taxonomy, slug="c_abf2")
term1 = current_flask_taxonomies.create_term(
id1,
extra_data={
"title": {
"cs": "otevřený přístup",
"en": "open access"
},
"relatedURI": {
"coar": "http://purl.org/coar/access_right/c_abf2",
"vocabs":
"https://vocabs.acdh.oeaw.ac.at/archeaccessrestrictions/public",
"eprint": "http://purl.org/eprint/accessRights/OpenAccess"
}
})
# resource type
id2 = TermIdentification(taxonomy=taxonomy, slug="bakalarske_prace")
term2 = current_flask_taxonomies.create_term(id2,
extra_data={
"title": {
"cs":
"Bakalářské práce",
"en":
"Bachelor’s theses"
}
})
# institution
id3 = TermIdentification(taxonomy=taxonomy, slug="61384984")
term3 = current_flask_taxonomies.create_term(
id3,
extra_data={
"title": {
"cs": "Akademie múzických umění v Praze",
"en": "Academy of Performing Arts in Prague"
},
"type": "veřejná VŠ",
"aliases": ["AMU"],
"related": {
"rid": "51000"
},
"address": "Malostranské náměstí 259/12, 118 00 Praha 1",
"ico": "61384984",
"url": "https://www.amu.cz",
"provider": True,
})
id3b = TermIdentification(taxonomy=taxonomy, slug="60461373")
term3b = current_flask_taxonomies.create_term(
id3b,
extra_data={
"title": {
"cs": "Vysoká škola chemicko-technologická v Praze",
"en": "University of Chemistry and Technology, Prague"
},
"type": "veřejná VŠ",
"aliases": ["VŠCHT"],
"related": {
"rid": "22000"
},
"address": "Technická 5, 166 28 Praha 6",
"ico": "60461373",
"url": "https://www.vscht.cz",
"provider": True,
})
# language
id4 = TermIdentification(taxonomy=taxonomy, slug="cze")
term4 = current_flask_taxonomies.create_term(
id4, extra_data={"title": {
"cs": "čeština",
"en": "Czech"
}})
# contributor
id5 = TermIdentification(taxonomy=taxonomy, slug="supervisor")
term5 = current_flask_taxonomies.create_term(id5,
extra_data={
"title": {
"cs": "supervizor",
"en": "supervisor"
},
"dataCiteCode":
"Supervisor"
})
# funder
id6 = TermIdentification(taxonomy=taxonomy, slug="ntk")
term6 = current_flask_taxonomies.create_term(
id6,
extra_data={
"title": {
"cs": "Národní technická knihovna",
"en": "National library of technology"
},
"funderISVaVaICode": "123456789"
})
# country
id7 = TermIdentification(taxonomy=taxonomy, slug="cz")
term7 = current_flask_taxonomies.create_term(id7,
extra_data={
"title": {
"cs": "Česko",
"en": "Czechia"
},
"code": {
"number": "203",
"alpha2": "CZ",
"alpha3": "CZE"
}
})
# relationship
id8 = TermIdentification(taxonomy=taxonomy, slug="isversionof")
term8 = current_flask_taxonomies.create_term(
id8, extra_data={"title": {
"cs": "jeVerzí",
"en": "isVersionOf"
}})
# rights
id9 = TermIdentification(taxonomy=taxonomy, slug="copyright")
term9 = current_flask_taxonomies.create_term(
id9,
extra_data={
"title": {
"cs":
"Dílo je chráněno podle autorského zákona č. 121/2000 Sb.",
"en":
"This work is protected under the Copyright Act No. 121/2000 Coll."
}
})
# series
id9 = TermIdentification(taxonomy=taxonomy, slug="maj")
term9 = current_flask_taxonomies.create_term(id9,
extra_data={
"seriesTitle": "maj",
"seriesVolume": "1"
})
# subject
id10 = TermIdentification(taxonomy=taxonomy, slug="psh3001")
term10 = current_flask_taxonomies.create_term(
id10,
extra_data={
"title": {
"cs": "Reynoldsovo číslo",
"en": "Reynolds number"
},
"reletedURI": ["http://psh.techlib.cz/skos/PSH3001"],
"DateRevised": "2007-01-26T16:14:37"
})
id11 = TermIdentification(taxonomy=taxonomy, slug="psh3000")
term11 = current_flask_taxonomies.create_term(
id11,
extra_data={
"title": {
"cs": "turbulentní proudění",
"en": "turbulent flow"
},
"reletedURI": ["http://psh.techlib.cz/skos/PSH3000"],
"DateRevised": "2007-01-26T16:14:37"
})
id12 = TermIdentification(taxonomy=taxonomy, slug="D010420")
term12 = current_flask_taxonomies.create_term(
id12,
extra_data={
"title": {
"cs": "pentany",
"en": "Pentanes"
},
"reletedURI": [
"http://www.medvik.cz/link/D010420",
"http://id.nlm.nih.gov/mesh/D010420"
],
"DateRevised":
"2007-01-26T16:14:37",
"DateCreated":
"2007-01-26T16:14:37",
"DateDateEstablished":
"2007-01-26T16:14:37",
})
db.session.commit()