def test_new_group_membership_is_empty(self):
s = Session()
group_name = 'new_group'
s.add_sample_group(group_name)
s.add_samples(copy.deepcopy(
test_samples_base_set)) # load without assigning a group
s_sample_ids = sorted(s.get_group_sample_ids(group_name))
self.assertListEqual(s_sample_ids, [])
def test_add_samples_with_group(self):
sample_ids = ["100715.fcs", "109567.fcs", "113548.fcs"]
s = Session()
group_name = 'gml'
s.add_sample_group(group_name)
s.add_samples(copy.deepcopy(test_samples_base_set), group_name)
s_sample_ids = sorted(s.get_group_sample_ids(group_name))
self.assertListEqual(sample_ids, s_sample_ids)
def test_analyze_single_sample(self):
wsp_path = "examples/data/8_color_data_set/8_color_ICS_simple.wsp"
sample_id = '101_DEN084Y5_15_E01_008_clean.fcs'
sample_grp = 'DEN'
fks = Session(copy.deepcopy(test_samples_8c_full_set))
fks.import_flowjo_workspace(wsp_path, ignore_missing_files=True)
sample_ids = fks.get_group_sample_ids(sample_grp)
self.assertEqual(len(sample_ids), 3)
fks.analyze_samples(sample_grp, sample_id=sample_id)
report = fks.get_group_report(sample_grp)
self.assertEqual(report['sample'].nunique(), 1)
def test_analyze_single_sample(self):
wsp_path = "examples/8_color_data_set/8_color_ICS_simple.wsp"
fcs_path = "examples/8_color_data_set/fcs_files"
sample_id = '101_DEN084Y5_15_E01_008_clean.fcs'
sample_grp = 'DEN'
fks = Session(fcs_samples=fcs_path)
fks.import_flowjo_workspace(wsp_path, ignore_missing_files=True)
sample_ids = fks.get_group_sample_ids(sample_grp)
self.assertEqual(len(sample_ids), 3)
fks.analyze_samples(sample_grp, sample_id=sample_id)
report = fks.get_group_report(sample_grp)
self.assertEqual(report.index.get_level_values('sample').nunique(), 1)
