print('found extra folder %s' % extra_folder_path)
call('cp -r %s %s' % (extra_folder_path, rawdatapath),
shell=True)
if os.path.isdir(pjoin(lucas_scanid_path, folder)):
acqId = fw.add_acquisition({
'label':
folder,
'session':
flywheel_exams[0]['fw_id']
})
for root, folders, files in os.walk(
pjoin(lucas_scanid_path, folder)):
for file in files:
print('uploading %s to acq %s %s' %
(pjoin(root, file), folder, acqId))
fw.upload_file_to_acquisition(
acqId, pjoin(root, file))
# download behavioral folders
for root, folders, files in os.walk(lucas_scanid_path):
for folder in folders:
if folder in behav_targets:
behav_folder_path = pjoin(root, folder)
print('found behav folder %s' % behav_folder_path)
files_under_behavioral = []
for root2, folders2, files2 in os.walk(
behav_folder_path):
for behav_file in files2:
files_under_behavioral.append(
pjoin(root2, behav_file))
# add behavioral to rawdata
call('cp -r %s %s' %
(pjoin(root, folder),
run = False
if '/fmri/' in root:
folder_list = pjoin(root, folder).split('/')
for i in range(len(folder_list)):
if folder_list[i] == 'fmri':
run = folder_list[i + 1]
break
for exam in flywheel_exams:
fw_acqs = fw.get_session_acquisitions(
exam['fw_id'])
for fw_acq in fw_acqs:
if fw_acq['label'] == run:
found_run_on_fw = True
for behav_path in files_under_behavioral:
print('uploading %s' % behav_path)
fw.upload_file_to_acquisition(
fw_acq['_id'], behav_path)
if not found_run_on_fw:
if run:
print(
'run %s not found, creating acquisition behavioral under flywheel exam id %s'
% (run, flywheel_exams[0]['fw_id']))
else:
print(
'creating acquisition behavioral under flywheel exam id %s'
% run, flywheel_exams[0]['fw_id'])
acqId = fw.add_acquisition({
'label':
'behavioral',
'session':
flywheel_exams[0]['fw_id']
})