print subjClass.targetDir
#try:
##motion_extraction.main(subjClass.targetDir, True, False, False)
#except:
#pass
#backUp.server_connect('147.47.228.192', os.path.dirname(subjClass.targetDir))
#freesurfer.main(True, False, False, subjClass.targetDir,
#os.path.join(subjClass.targetDir, 'FREESURFER'))
freesurfer_summary.main('/Volumes/promise/nas_BackUp/CCNC_MRI_3T/CHR/CHR45_JYS/followUp/2yfu', None, "ctx_lh_G_cuneus", True, True, True, True)
#os.popen('sudo rm -rf /Volumes/promise/nas_BackUp/CCNC_MRI_3T/CHR/CHR95_KSU')
#savedList =
#if 'ha' in os.listdir(os.getcwd()):
#with open('ha','r') as f:
#[newDirectoryList, logDf] = pickle.load(f)
## copied directory check test
#else:
#logDf = copiedDirectoryCheck('pracDir/from', 'pracDir/from/log.xlsx')
def backUp(inputDirs, backUpFrom, USBlogFile, backUpTo, DataBaseAddress, spreadsheet, freesurferOn, motionOn, copyExecuteOn, nasBackupOn):
# External HDD log
if USBlogFile:
logFileInUSB = USBlogFile
elif inputDirs:
logFileInUSB = os.path.join(os.getcwd(),"log.xlsx")
else:
logFileInUSB = os.path.join(backUpFrom,"log.xlsx")
logDf = copiedDirectoryCheck(backUpFrom,logFileInUSB)
newDirectoryList,logDf = newDirectoryGrep(inputDirs, backUpFrom,logDf)
logDf.to_excel(logFileInUSB,'Sheet1')
if newDirectoryList==[]:
sys.exit('Everything have been backed up !')
subjectClassList = []
for newDirectory in newDirectoryList:
subjClass = subj.subject(newDirectory, backUpTo)
checkFileNumbers(subjClass)
subjectClassList.append(subjClass)
if copyExecuteOn:
executeCopy(subjClass)
subjDf = saveLog(subjClass)
dbDf = processDB(DataBaseAddress)
newDf = pd.concat([dbDf, subjDf]).reset_index()
newDf = newDf[[ u'koreanName', u'subjectName', u'subjectInitial',
u'group', u'sex', u'age',
u'DOB', u'scanDate', u'timeline',
u'studyname', u'patientNumber', u'T1Number',
u'DTINumber', u'DKINumber', u'RESTNumber',
u'REST2Number', u'folderName', u'backUpBy',
u'note']]
newDf['koreanName'] = newDf['koreanName'].str.decode('utf-8')
newDf['note'] = newDf['note'].str.decode('utf-8')
newDf.to_excel(DataBaseAddress, 'Sheet1')
#os.chmod(DataBaseAddress, 0o2770)
updateSpreadSheet.main(False, DataBaseAddress, spreadsheet)
if motionOn:
print 'Now, running motion_extraction'
for subjectClass in subjectClassList:
motion_extraction.main(subjectClass.targetDir, True, True, False)
if nasBackupOn:
server = '147.47.228.192'
for subjectClass in subjectClassList:
copiedDir=os.path.dirname(subjectClass.targetDir)
server_connect(server, copiedDir)
if freesurferOn:
for subjectClass in subjectClassList:
freesurfer.main(subjectClass.targetDir,
os.path.join(subjectClass.targetDir, 'FREESURFER'))
freesurfer_summary.main(copiedDir, None, "ctx_lh_G_cuneus", True, True, True, True)
print 'Completed\n'
newDf.to_excel(DataBaseAddress, 'Sheet1')
os.chmod(DataBaseAddress, 0o2770)
print subjClass.targetDir
#try:
##motion_extraction.main(subjClass.targetDir, True, False, False)
#except:
#pass
#backUp.server_connect('147.47.228.192', os.path.dirname(subjClass.targetDir))
#freesurfer.main(True, False, False, subjClass.targetDir,
#os.path.join(subjClass.targetDir, 'FREESURFER'))
freesurfer_summary.main(
'/Volumes/promise/nas_BackUp/CCNC_MRI_3T/CHR/CHR45_JYS/followUp/2yfu',
None, "ctx_lh_G_cuneus", True, True, True, True)
#os.popen('sudo rm -rf /Volumes/promise/nas_BackUp/CCNC_MRI_3T/CHR/CHR95_KSU')
#savedList =
#if 'ha' in os.listdir(os.getcwd()):
#with open('ha','r') as f:
#[newDirectoryList, logDf] = pickle.load(f)
## copied directory check test
#else:
#logDf = copiedDirectoryCheck('pracDir/from', 'pracDir/from/log.xlsx')
## newDirectoryGrep