def _compute_fst_results_for_comparison(comparison_key, cohort_a, cohort_b,
otu_defs, geno_samples, data_dir,
file_owner):
noprompt = True
fst_input_etl.dump_comparison_classification(comparison_key,
cohort_a,
cohort_b,
geno_samples,
otu_defs,
data_dir,
file_owner=file_owner)
fst_input_etl.dump_feature_metadata(otu_defs,
data_dir,
file_owner=file_owner)
if DEBUGGING_CONFIG:
fst_config = fst_input_etl._make_debugging_config(
comparison_key, data_dir, otu_defs)
else:
fst_config = fst_input_etl._make_fst_config(comparison_key, data_dir,
otu_defs)
scratch_dirname = dirname_of_fst_scratch(data_dir)
file_utils.ensure_directory(scratch_dirname, file_owner=file_owner)
os.environ['JOBLIB_TEMP_FOLDER'] = scratch_dirname
fst_runner = FST(fst_config, noprompt)
print('begin FST.refuse(): ' + comparison_key)
fst_runner.refuse()
print('end FST.refuse(): ' + comparison_key)
return
