float(linecache.getline(i, 25).split(':')[1].strip())
exit()
# DEBUG
Max = [float(linecache.getline(i, 25).split(':')[1].strip())
for i in LogFiles]
Mean = [float(linecache.getline(i, 26).split(':')[1].strip())
for i in LogFiles]
STD = [float(linecache.getline(i, 27).split(':')[1].strip())
for i in LogFiles]
# Generate folder names
Experiment = [item[:-len('.analysis.log')] for item in LogFiles]
# Get git hash once per session, so it doesn't take so long for Ivan...
git_hash = functions.get_git_hash()
if 'linux' in sys.platform:
git_hash += ' (from Linux)'
else:
git_hash += ' (from OS X)'
# Go through each selected experiment (in the shuffled list)
for Counter, SelectedExperiment in enumerate(Experiment):
print str(Counter + 1) + '/' + str(len(Experiment)), '|', \
Scintillator[Counter], '|', Sensor[Counter], '|', \
Lens[Counter], '|', ExperimentID[Counter], '|', SDD[Counter], \
'mm | git version', git_hash
# See if we've already ran the resolution evaluation, i.e. have a
# 'ExperimentID.resolution.png' file. If we have, show it and let the user
# decide to rerun, otherwise skip to next
# Load image
print '\tWe thus do not archive it again.'
print '\tTake a look at', os.path.join(
os.path.dirname(Experiment[SelectedExperiment])[len(
StartingFolder):], ExperimentID[SelectedExperiment] +
'.archive.log'), 'for more info'
print
else:
# Archive it!
logfile = functions.myLogger(
os.path.dirname(Experiment[SelectedExperiment]),
ExperimentID[SelectedExperiment] + '.archive.log')
logfile.info('Archival log file for Experiment ID %s, archived on '
'%s', ExperimentID[SelectedExperiment],
time.strftime('%d.%m.%Y at %H:%M:%S'))
logfile.info('\nMade with "%s" at Revision %s', os.path.basename(
__file__), functions.get_git_hash())
logfile.info(80 * '-')
# Tar the selected folder
TarCommand = ['tar', '-czf', Experiment[SelectedExperiment] +
'.tar.gz', '-C',
os.path.dirname(Experiment[SelectedExperiment]),
os.path.basename(Experiment[SelectedExperiment])]
print 'Packing', ExperimentID[SelectedExperiment]
logfile.info('Packing the original files with')
logfile.info('---')
logfile.info(' '.join(TarCommand))
logfile.info('---')
packit = subprocess.Popen(TarCommand, stdout=subprocess.PIPE)
output, error = packit.communicate()
if output:
print output
Experiment[SelectedExperiment][len(StartingFolder) + 1:]
# Always keep second image
Keepers.append(2)
Keepers = numpy.unique(Keepers)
print 'We keep', len(Keepers), 'images and delete', \
NumberOfRadiographies[SelectedExperiment] - len(Keepers), 'images'
if NumberOfRadiographies[SelectedExperiment] - len(Keepers) > 1:
# When we have as many files left as we have 'Keepers' we most probably
# have already done a deletion round, then the 'if' clause above
# evaluates to 'True'
logfile.info(
'Deletion log file for Experiment ID %s, deletion done on %s',
ExperimentID[SelectedExperiment],
time.strftime('%d.%m.%Y at %H:%M:%S'))
logfile.info('\nMade with "%s" at Revision %s',
os.path.basename(__file__), functions.get_git_hash())
logfile.info(80 * '-')
logfile.info('Grabbing Information from %s', AnalysisLogFile)
logfile.info(80 * '-')
logfile.info('In the folder %s we keep image',
Experiment[SelectedExperiment])
LogFileToRead = open(AnalysisLogFile, 'r')
for line in LogFileToRead:
if len(line.split('-->')) == 2:
FileNumber = int(line.split('/')[0]) - 1
if FileNumber in Keepers:
logfile.info('%s/%s | %s | with info "%s"',
str(FileNumber).rjust(2),
NumberOfRadiographies[SelectedExperiment],
os.path.basename(Radiographies[SelectedExperiment][FileNumber - 1]),
line.strip())
