def testProtected(self):
protectedPath = "datasets/search"
request = protocol.SearchDatasetsRequest()
response = self.sendPostRequest(protectedPath, request)
self.assertEquals(
response.status_code, 401, "If Auth0 is enabled this endpoint "
"is not accessible without auth.")
def getAllDatasets(self):
"""
Gets all datasets available
"""
path = 'datasets/search'
request = protocol.SearchDatasetsRequest()
responseData = self.sendSearchRequest(
path, request, protocol.SearchDatasetsResponse)
return responseData.datasets
def testPhenotypeAssociationSetSearch(self):
request = protocol.SearchDatasetsRequest()
response = self.sendSearchRequest("datasets/search", request,
protocol.SearchDatasetsResponse)
datasetId = response.datasets[0].id
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = datasetId
response = self.sendSearchRequest(
"phenotypeassociationsets/search", request,
protocol.SearchPhenotypeAssociationSetsResponse)
# there should be an array
self.assertIsNotNone(response.phenotype_association_sets)
# there should be at least one entry
self.assertGreater(len(response.phenotype_association_sets), 0)
def testBadBearer(self):
"""
Tests to see if a malformed bearer token fails in expected ways
"""
response = self.client.get('/')
self.assertEqual(response.status_code, 401)
protectedPath = "datasets/search"
request = protocol.SearchDatasetsRequest()
headers = {"Authorization": ""}
response = self.sendPostRequest(protectedPath, request, headers)
self.assertEquals(response.status_code, 401, "No bearer should fail"
"with 401")
headers = {"Authorization": "Bearer"}
response = self.sendPostRequest(protectedPath, request, headers)
self.assertEquals(response.status_code, 401, "")
def getPhenotypeAssociationSetId(self):
"""
Gets the dataset phenotype association set ID
"""
request = protocol.SearchDatasetsRequest()
response = self.sendSearchRequest("datasets/search", request,
protocol.SearchDatasetsResponse)
datasetId = response.datasets[0].id
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = datasetId
response = self.sendPostRequest("phenotypeassociationsets/search",
request)
response = protocol.fromJson(
response.data, protocol.SearchPhenotypeAssociationSetsResponse)
return response.phenotype_association_sets[0].id
def sendDatasetsSearch(self):
request = protocol.SearchDatasetsRequest()
return self.sendPostRequest('/datasets/search', request)