def get_file_sources():
global _file_sources
if _file_sources is None:
from galaxy.files import ConfiguredFileSources
file_sources = None
if os.path.exists("file_sources.json"):
file_sources_as_dict = None
with open("file_sources.json") as f:
file_sources_as_dict = load(f)
if file_sources_as_dict is not None:
file_sources = ConfiguredFileSources.from_dict(
file_sources_as_dict)
if file_sources is None:
ConfiguredFileSources.from_dict([])
_file_sources = file_sources
return _file_sources
def get_file_sources(working_directory):
global _file_sources
if _file_sources is None:
from galaxy.files import ConfiguredFileSources
file_sources = None
file_sources_path = os.path.join(working_directory, "file_sources.json")
if os.path.exists(file_sources_path):
file_sources_as_dict = None
with open(file_sources_path) as f:
file_sources_as_dict = json.load(f)
if file_sources_as_dict is not None:
file_sources = ConfiguredFileSources.from_dict(file_sources_as_dict)
if file_sources is None:
ConfiguredFileSources.from_dict(None)
_file_sources = file_sources
return _file_sources
def get_file_sources(file_sources_path):
assert os.path.exists(file_sources_path), f"file sources path [{file_sources_path}] does not exist"
from galaxy.files import ConfiguredFileSources
with open(file_sources_path) as f:
file_sources_as_dict = json.load(f)
file_sources = ConfiguredFileSources.from_dict(file_sources_as_dict)
return file_sources
def get_file_sources(file_sources_path):
assert os.path.exists(
file_sources_path
), "file sources path [%s] does not exist" % file_sources_path
with open(file_sources_path) as f:
file_sources_as_dict = json.load(f)
file_sources = ConfiguredFileSources.from_dict(file_sources_as_dict)
return file_sources
def serialize_and_recover(file_sources_o, user_context=None):
as_dict = file_sources_o.to_dict(for_serialization=True,
user_context=user_context)
file_sources = ConfiguredFileSources.from_dict(as_dict)
return file_sources
def file_sources(self) -> ConfiguredFileSources:
return ConfiguredFileSources.from_dict(self.file_sources_dict)