def handle_dataset_collection_display(self, line, hdca):
hdca_serializer = HDCASerializer(self.trans.app)
hdca_view = hdca_serializer.serialize_to_view(hdca,
user=self.trans.user,
trans=self.trans,
view="summary")
self.ensure_rendering_data_for("history_dataset_collections",
hdca).update(hdca_view)
def _remap(container, line):
id_match = re.search(ID_PATTERN, line)
object_id = None
encoded_id = None
if id_match:
object_id = int(id_match.group(2))
encoded_id = trans.security.encode_id(object_id)
line = line.replace(id_match.group(),
"%s=%s" % (id_match.group(1), encoded_id))
def ensure_rendering_data_for(object_type, encoded_id):
if object_type not in extra_rendering_data:
extra_rendering_data[object_type] = {}
object_type_data = extra_rendering_data[object_type]
if encoded_id not in object_type_data:
object_type_data[encoded_id] = {}
return object_type_data[encoded_id]
def extend_history_dataset_rendering_data(key, val, default_val):
ensure_rendering_data_for("history_datasets",
encoded_id)[key] = val or default_val
if container == "history_dataset_display":
assert object_id is not None
hda = hdas_manager.get_accessible(object_id, trans.user)
if "history_datasets" not in extra_rendering_data:
extra_rendering_data["history_datasets"] = {}
extend_history_dataset_rendering_data("name", hda.name, "")
elif container == "history_dataset_peek":
assert object_id is not None
hda = hdas_manager.get_accessible(object_id, trans.user)
peek = hda.peek
extend_history_dataset_rendering_data(
"peek", peek, "*No Dataset Peek Available*")
elif container == "history_dataset_info":
hda = hdas_manager.get_accessible(object_id, trans.user)
info = hda.info
extend_history_dataset_rendering_data(
"info", info, "*No Dataset Peek Available*")
elif container == "workflow_display":
# TODO: should be workflow id...
stored_workflow = workflows_manager.get_stored_accessible_workflow(
trans, encoded_id)
ensure_rendering_data_for(
"workflows", encoded_id)["name"] = stored_workflow.name
elif container == "history_dataset_collection_display":
collection_manager = DatasetCollectionManager(trans.app)
hdca = collection_manager.get_dataset_collection_instance(
trans, "history", encoded_id)
hdca_serializer = HDCASerializer(trans.app)
hdca_view = hdca_serializer.serialize_to_view(hdca,
user=trans.user,
trans=trans,
view="summary")
if "history_dataset_collections" not in extra_rendering_data:
extra_rendering_data["history_dataset_collections"] = {}
ensure_rendering_data_for("history_dataset_collections",
encoded_id).update(hdca_view)
elif container == "tool_stdout":
job_manager = JobManager(trans.app)
job = job_manager.get_accessible_job(trans, object_id)
ensure_rendering_data_for(
"jobs", encoded_id
)["tool_stdout"] = job.tool_stdout or "*No Standard Output Available*"
elif container == "tool_stderr":
job_manager = JobManager(trans.app)
job = job_manager.get_accessible_job(trans, object_id)
ensure_rendering_data_for(
"jobs", encoded_id
)["tool_stderr"] = job.tool_stderr or "*No Standard Error Available*"
return (line, False)