def generate_report_json(self,
trans,
invocation,
runtime_report_config_json=None):
"""
"""
workflow_manager = workflows.WorkflowsManager(trans.app)
workflow_encoded_id = trans.app.security.encode_id(
invocation.workflow_id)
workflow = workflow_manager.get_stored_accessible_workflow(
trans, workflow_encoded_id, by_stored_id=False)
internal_markdown = self._generate_internal_markdown(
trans,
invocation,
runtime_report_config_json=runtime_report_config_json)
export_markdown, extra_rendering_data = ready_galaxy_markdown_for_export(
trans, internal_markdown)
rval = {
"render_format":
"markdown", # Presumably the frontend could render things other ways.
"markdown": export_markdown,
"invocation_markdown": export_markdown,
"model_class": "Report",
"id": trans.app.security.encode_id(invocation.workflow_id),
"username": trans.user.username,
"title": workflow.name,
}
rval.update(extra_rendering_data)
return rval
def __init__(self, app):
super(HistoriesController, self).__init__(app)
self.citations_manager = citations.CitationsManager(app)
self.user_manager = users.UserManager(app)
self.workflow_manager = workflows.WorkflowsManager(app)
self.manager = histories.HistoryManager(app)
self.serializer = histories.HistorySerializer(app)
self.deserializer = histories.HistoryDeserializer(app)
self.filters = histories.HistoryFilters(app)
def __init__(self, app):
super().__init__(app)
self.citations_manager = citations.CitationsManager(app)
self.user_manager = users.UserManager(app)
self.workflow_manager = workflows.WorkflowsManager(app)
self.manager = histories.HistoryManager(app)
self.history_export_view = histories.HistoryExportView(app)
self.serializer = histories.HistorySerializer(app)
self.deserializer = histories.HistoryDeserializer(app)
self.filters = histories.HistoryFilters(app)
def __init__(self, app):
super(WorkflowsAPIController, self).__init__(app)
self.history_manager = histories.HistoryManager(app)
self.workflow_manager = workflows.WorkflowsManager(app)
self.workflow_contents_manager = workflows.WorkflowContentsManager()
