def get_containing_tool_sections( self, tool_config ):
"""
If tool_config is defined somewhere in self.proprietary_tool_panel_elems, return True and a list of ToolSections in which the
tool is displayed. If the tool is displayed outside of any sections, None is appended to the list.
"""
tool_sections = []
is_displayed = False
for proprietary_tool_panel_elem in self.proprietary_tool_panel_elems:
if proprietary_tool_panel_elem.tag == 'tool':
# The proprietary_tool_panel_elem looks something like <tool file="emboss_5/emboss_antigenic.xml" />.
proprietary_tool_config = proprietary_tool_panel_elem.get( 'file' )
if tool_config == proprietary_tool_config:
# The tool is loaded outside of any sections.
tool_sections.append( None )
if not is_displayed:
is_displayed = True
if proprietary_tool_panel_elem.tag == 'section':
# The proprietary_tool_panel_elem looks something like <section name="EMBOSS" id="EMBOSSLite">.
for section_elem in proprietary_tool_panel_elem:
if section_elem.tag == 'tool':
# The section_elem looks something like <tool file="emboss_5/emboss_antigenic.xml" />.
proprietary_tool_config = section_elem.get( 'file' )
if tool_config == proprietary_tool_config:
# The tool is loaded inside of the section_elem.
tool_sections.append( ToolSection( proprietary_tool_panel_elem ) )
if not is_displayed:
is_displayed = True
return is_displayed, tool_sections
def test_tool_section():
elem = ET.Element('section')
elem.attrib['name'] = "Cool Tools"
elem.attrib['id'] = "cool1"
section = ToolSection(elem)
assert section.id == "cool1"
assert section.name == "Cool Tools"
assert section.version == ""
section = ToolSection(dict(id="cool1", name="Cool Tools"))
assert section.id == "cool1"
assert section.name == "Cool Tools"
assert section.version == ""
section = ToolSection()
assert section.id == ""
assert section.name == ""
assert section.version == ""