def update_in_shed_tool_config(self):
"""
A tool shed repository is being updated so change the shed_tool_conf file. Parse the config
file to generate the entire list of config_elems instead of using the in-memory list.
"""
shed_conf_dict = self.shed_config_dict or self.repository.get_shed_config_dict(
self.app)
shed_tool_conf = shed_conf_dict['config_filename']
tool_path = shed_conf_dict['tool_path']
self.tpm.generate_tool_panel_dict_from_shed_tool_conf_entries(
self.repository)
repository_tools_tups = self.get_repository_tools_tups()
clone_url = common_util.generate_clone_url_for_installed_repository(
self.app, self.repository)
tool_shed = self.tool_shed_from_repository_clone_url()
owner = self.repository.owner
if not owner:
cleaned_repository_clone_url = common_util.remove_protocol_and_user_from_clone_url(
clone_url)
owner = get_repository_owner(cleaned_repository_clone_url)
guid_to_tool_elem_dict = {}
for tool_config_filename, guid, tool in repository_tools_tups:
guid_to_tool_elem_dict[guid] = self.tpm.generate_tool_elem(
tool_shed, self.repository.name,
self.repository.changeset_revision, self.repository.owner
or '', tool_config_filename, tool, None)
config_elems = []
tree, error_message = xml_util.parse_xml(shed_tool_conf)
if tree:
root = tree.getroot()
for elem in root:
if elem.tag == 'section':
for i, tool_elem in enumerate(elem):
guid = tool_elem.attrib.get('guid')
if guid in guid_to_tool_elem_dict:
elem[i] = guid_to_tool_elem_dict[guid]
elif elem.tag == 'tool':
guid = elem.attrib.get('guid')
if guid in guid_to_tool_elem_dict:
elem = guid_to_tool_elem_dict[guid]
config_elems.append(elem)
self.tpm.config_elems_to_xml_file(config_elems, shed_tool_conf,
tool_path)
def set_repository(self, repository):
super().set_repository(repository)
self.repository_clone_url = common_util.generate_clone_url_for_installed_repository(
self.app, repository)
def set_repository(self, repository):
super(InstalledRepositoryMetadataManager,
self).set_repository(repository)
self.repository_clone_url = common_util.generate_clone_url_for_installed_repository(
self.app, repository)
