def _validate_and_parse_update_payload(self, payload):
MINIMUM_STRING_LENGTH = 1
validated_payload = {}
for key, val in payload.items():
if val is None:
continue
if key in ('name'):
if len(val) < MINIMUM_STRING_LENGTH:
raise RequestParameterInvalidException('%s must have at least length of %s' % (key, MINIMUM_STRING_LENGTH))
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
if key in ('misc_info'):
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
if key in ('file_ext'):
datatype = self.app.datatypes_registry.get_datatype_by_extension(val)
if datatype is None:
raise RequestParameterInvalidException('This Galaxy does not recognize the datatype of: %s' % (val))
validated_payload[key] = val
if key in ('genome_build'):
if len(val) < MINIMUM_STRING_LENGTH:
raise RequestParameterInvalidException('%s must have at least length of %s' % (key, MINIMUM_STRING_LENGTH))
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
return validated_payload
def _validate_and_parse_update_payload(self, payload):
MINIMUM_STRING_LENGTH = 1
validated_payload = {}
for key, val in payload.items():
if val is None:
continue
if key in ('name'):
if len(val) < MINIMUM_STRING_LENGTH:
raise RequestParameterInvalidException(
'%s must have at least length of %s' %
(key, MINIMUM_STRING_LENGTH))
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
if key in ('misc_info'):
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
if key in ('file_ext'):
datatype = self.app.datatypes_registry.get_datatype_by_extension(
val)
if datatype is None:
raise RequestParameterInvalidException(
'This Galaxy does not recognize the datatype of: %s' %
(val))
validated_payload[key] = val
if key in ('genome_build'):
if len(val) < MINIMUM_STRING_LENGTH:
raise RequestParameterInvalidException(
'%s must have at least length of %s' %
(key, MINIMUM_STRING_LENGTH))
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
return validated_payload
def _validate_and_parse_update_payload( self, payload ):
validated_payload = {}
for key, val in payload.items():
if val is None:
continue
if key in ( 'name' ):
val = validation.validate_and_sanitize_basestring( key, val )
validated_payload[ key ] = val
if key in ( 'deleted', 'visible' ):
validated_payload[ key ] = validation.validate_boolean( key, val )
elif key == 'tags':
validated_payload[ key ] = validation.validate_and_sanitize_basestring_list( key, val )
return validated_payload
def _validate_and_parse_update_payload( self, payload ):
validated_payload = {}
for key, val in payload.items():
if val is None:
continue
if key in ( 'name' ):
val = validation.validate_and_sanitize_basestring( key, val )
validated_payload[ key ] = val
if key in ( 'deleted', 'visible' ):
validated_payload[ key ] = validation.validate_boolean( key, val )
elif key == 'tags':
validated_payload[ key ] = validation.validate_and_sanitize_basestring_list( key, val )
return validated_payload
def _validate_and_parse_update_payload(self, payload):
MINIMUM_STRING_LENGTH = 1
validated_payload = {}
for key, val in payload.items():
if val is None:
continue
if key in ('name'):
if len(val) < MINIMUM_STRING_LENGTH:
raise RequestParameterInvalidException(
f'{key} must have at least length of {MINIMUM_STRING_LENGTH}'
)
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
if key in ('misc_info', 'message'):
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
if key in ('file_ext'):
datatype = self.app.datatypes_registry.get_datatype_by_extension(
val)
if datatype is None and val not in ("auto", ):
raise RequestParameterInvalidException(
f'This Galaxy does not recognize the datatype of: {val}'
)
validated_payload[key] = val
if key in ('genome_build'):
if len(val) < MINIMUM_STRING_LENGTH:
raise RequestParameterInvalidException(
f'{key} must have at least length of {MINIMUM_STRING_LENGTH}'
)
val = validation.validate_and_sanitize_basestring(key, val)
validated_payload[key] = val
if key in ('tags'):
val = validation.validate_and_sanitize_basestring_list(
key, util.listify(val))
validated_payload[key] = val
return validated_payload
