def create_role(self, trans, **kwd):
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
name = util.restore_text(params.get('name', ''))
description = util.restore_text(params.get('description', ''))
in_users = util.listify(params.get('in_users', []))
out_users = util.listify(params.get('out_users', []))
in_groups = util.listify(params.get('in_groups', []))
out_groups = util.listify(params.get('out_groups', []))
create_group_for_role = params.get('create_group_for_role', '')
create_group_for_role_checked = CheckboxField.is_checked(create_group_for_role)
ok = True
if params.get('create_role_button', False):
if not name or not description:
message = "Enter a valid name and a description."
status = 'error'
ok = False
elif trans.sa_session.query(trans.app.model.Role).filter(trans.app.model.Role.table.c.name == name).first():
message = "Role names must be unique and a role with that name already exists, so choose another name."
status = 'error'
ok = False
else:
# Create the role
role, num_in_groups = trans.app.security_agent.create_role(
name, description, in_users, in_groups, create_group_for_role=create_group_for_role_checked)
message = "Role '%s' has been created with %d associated users and %d associated groups. " \
% (role.name, len(in_users), num_in_groups)
if create_group_for_role_checked:
message += 'One of the groups associated with this role is the newly created group with the same name.'
trans.response.send_redirect(web.url_for(controller='admin',
action='roles',
message=util.sanitize_text(message),
status='done'))
if ok:
for user in trans.sa_session.query(trans.app.model.User) \
.filter(trans.app.model.User.table.c.deleted == false()) \
.order_by(trans.app.model.User.table.c.email):
out_users.append((user.id, user.email))
for group in trans.sa_session.query(trans.app.model.Group) \
.filter(trans.app.model.Group.table.c.deleted == false()) \
.order_by(trans.app.model.Group.table.c.name):
out_groups.append((group.id, group.name))
return trans.fill_template('/webapps/tool_shed/admin/dataset_security/role/role_create.mako',
name=name,
description=description,
in_users=in_users,
out_users=out_users,
in_groups=in_groups,
out_groups=out_groups,
create_group_for_role_checked=create_group_for_role_checked,
message=message,
status=status)
def edit_review( self, trans, **kwd ):
# The value of the received id is the encoded review id.
message = escape( kwd.get( 'message', '' ) )
status = kwd.get( 'status', 'done' )
review_id = kwd.get( 'id', None )
review = review_util.get_review( trans.app, review_id )
components_dict = odict()
for component in review_util.get_components( trans.app ):
components_dict[ component.name ] = dict( component=component, component_review=None )
repository = review.repository
repo = hg_util.get_repo_for_repository( trans.app, repository=repository, repo_path=None, create=False )
for component_review in review.component_reviews:
if component_review and component_review.component:
component_name = component_review.component.name
if component_name in components_dict:
component_review_dict = components_dict[ component_name ]
component_review_dict[ 'component_review' ] = component_review
components_dict[ component_name ] = component_review_dict
# Handle a Save button click.
save_button_clicked = False
save_buttons = [ '%s%sreview_button' % ( comp_name, STRSEP ) for comp_name in components_dict.keys() ]
save_buttons.append( 'revision_approved_button' )
for save_button in save_buttons:
if save_button in kwd:
save_button_clicked = True
break
if save_button_clicked:
# Handle the revision_approved_select_field value.
revision_approved = kwd.get( 'revision_approved', None )
revision_approved_setting_changed = False
if revision_approved:
revision_approved = str( revision_approved )
if review.approved != revision_approved:
revision_approved_setting_changed = True
review.approved = revision_approved
trans.sa_session.add( review )
trans.sa_session.flush()
saved_component_names = []
for component_name in components_dict.keys():
flushed = False
# Retrieve the review information from the form.
# The star rating form field is a radio button list, so it will not be received if it was not clicked in the form.
# Due to this behavior, default the value to 0.
rating = 0
for k, v in kwd.items():
if k.startswith( '%s%s' % ( component_name, STRSEP ) ):
component_review_attr = k.replace( '%s%s' % ( component_name, STRSEP ), '' )
if component_review_attr == 'component_id':
component_id = str( v )
elif component_review_attr == 'comment':
comment = str( v )
elif component_review_attr == 'private':
private = CheckboxField.is_checked( v )
elif component_review_attr == 'approved':
approved = str( v )
elif component_review_attr == 'rating':
rating = int( str( v ) )
component = review_util.get_component( trans.app, component_id )
component_review = \
review_util.get_component_review_by_repository_review_id_component_id( trans.app,
review_id,
component_id )
if component_review:
# See if the existing component review should be updated.
if component_review.comment != comment or \
component_review.private != private or \
component_review.approved != approved or \
component_review.rating != rating:
component_review.comment = comment
component_review.private = private
component_review.approved = approved
component_review.rating = rating
trans.sa_session.add( component_review )
trans.sa_session.flush()
flushed = True
saved_component_names.append( component_name )
else:
# See if a new component_review should be created.
if comment or private or approved != trans.model.ComponentReview.approved_states.NO or rating:
component_review = trans.model.ComponentReview( repository_review_id=review.id,
component_id=component.id,
comment=comment,
approved=approved,
rating=rating )
trans.sa_session.add( component_review )
trans.sa_session.flush()
flushed = True
saved_component_names.append( component_name )
if flushed:
# Update the repository rating value to be the average of all component review ratings.
average_rating = trans.sa_session.query( func.avg( trans.model.ComponentReview.table.c.rating ) ) \
.filter( and_( trans.model.ComponentReview.table.c.repository_review_id == review.id,
trans.model.ComponentReview.table.c.deleted == false(),
trans.model.ComponentReview.table.c.approved != trans.model.ComponentReview.approved_states.NA ) ) \
.scalar()
if average_rating is not None:
review.rating = int( average_rating )
trans.sa_session.add( review )
trans.sa_session.flush()
# Update the information in components_dict.
if component_name in components_dict:
component_review_dict = components_dict[ component_name ]
component_review_dict[ 'component_review' ] = component_review
components_dict[ component_name ] = component_review_dict
if revision_approved_setting_changed:
message += 'Approved value <b>%s</b> saved for this revision.<br/>' % review.approved
if saved_component_names:
message += 'Reviews were saved for components: %s' % ', '.join( saved_component_names )
if not revision_approved_setting_changed and not saved_component_names:
message += 'No changes were made to this review, so nothing was saved.'
if review and review.approved:
selected_value = review.approved
else:
selected_value = trans.model.ComponentReview.approved_states.NO
revision_approved_select_field = grids_util.build_approved_select_field( trans,
name='revision_approved',
selected_value=selected_value,
for_component=False )
rev, changeset_revision_label = hg_util.get_rev_label_from_changeset_revision( repo, review.changeset_revision )
return trans.fill_template( '/webapps/tool_shed/repository_review/edit_review.mako',
repository=repository,
review=review,
changeset_revision_label=changeset_revision_label,
revision_approved_select_field=revision_approved_select_field,
components_dict=components_dict,
message=message,
status=status )
def render_render_registration_form(context, form_action=None):
context.caller_stack._push_frame()
try:
_import_ns = {}
_mako_get_namespace(context, '__anon_0x5b10f90')._populate(
_import_ns, [u'render_msg'])
redirect = _import_ns.get('redirect',
context.get('redirect', UNDEFINED))
username = _import_ns.get('username',
context.get('username', UNDEFINED))
trans = _import_ns.get('trans', context.get('trans', UNDEFINED))
user_type_form_definition = _import_ns.get(
'user_type_form_definition',
context.get('user_type_form_definition', UNDEFINED))
confirm = _import_ns.get('confirm', context.get('confirm', UNDEFINED))
h = _import_ns.get('h', context.get('h', UNDEFINED))
len = _import_ns.get('len', context.get('len', UNDEFINED))
user_type_fd_id_select_field = _import_ns.get(
'user_type_fd_id_select_field',
context.get('user_type_fd_id_select_field', UNDEFINED))
widgets = _import_ns.get('widgets', context.get('widgets', UNDEFINED))
subscribe_checked = _import_ns.get(
'subscribe_checked', context.get('subscribe_checked', UNDEFINED))
cntrller = _import_ns.get('cntrller',
context.get('cntrller', UNDEFINED))
webapp = _import_ns.get('webapp', context.get('webapp', UNDEFINED))
password = _import_ns.get('password',
context.get('password', UNDEFINED))
email = _import_ns.get('email', context.get('email', UNDEFINED))
__M_writer = context.writer()
# SOURCE LINE 24
__M_writer(u'\n\n ')
# SOURCE LINE 26
if form_action is None:
form_action = h.url_for(controller='user',
action='create',
cntrller=cntrller)
from galaxy.web.form_builder import CheckboxField
subscribe_check_box = CheckboxField('subscribe')
# SOURCE LINE 31
__M_writer(
u'\n\n <div class="toolForm">\n <form name="registration" id="registration" action="'
)
# SOURCE LINE 34
__M_writer(unicode(form_action))
__M_writer(
u'" method="post" >\n <div class="toolFormTitle">Create account</div>\n <div class="form-row">\n <label>Email address:</label>\n <input type="text" name="email" value="'
)
# SOURCE LINE 38
__M_writer(unicode(email))
__M_writer(
u'" size="40"/>\n <input type="hidden" name="webapp" value="'
)
# SOURCE LINE 39
__M_writer(unicode(webapp))
__M_writer(
u'" size="40"/>\n <input type="hidden" name="redirect" value="'
)
# SOURCE LINE 40
__M_writer(unicode(redirect))
__M_writer(
u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Password:</label>\n <input type="password" name="password" value="'
)
# SOURCE LINE 44
__M_writer(unicode(password))
__M_writer(
u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Confirm password:</label>\n <input type="password" name="confirm" value="'
)
# SOURCE LINE 48
__M_writer(unicode(confirm))
__M_writer(
u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Public name:</label>\n <input type="text" name="username" size="40" value="'
)
# SOURCE LINE 52
__M_writer(unicode(username))
__M_writer(u'"/>\n')
# SOURCE LINE 53
if webapp == 'galaxy':
# SOURCE LINE 54
__M_writer(
u' <div class="toolParamHelp" style="clear: both;">\n Your public name is an identifier that will be used to generate addresses for information\n you share publicly. Public names must be at least four characters in length and contain only lower-case\n letters, numbers, and the \'-\' character.\n </div>\n'
)
# SOURCE LINE 59
else:
# SOURCE LINE 60
__M_writer(
u' <div class="toolParamHelp" style="clear: both;">\n Your public name provides a means of identifying you publicly within this tool shed. Public\n names must be at least four characters in length and contain only lower-case letters, numbers,\n and the \'-\' character. You cannot change your public name after you have created a repository\n in this tool shed.\n </div>\n'
)
pass
# SOURCE LINE 67
__M_writer(u' </div>\n')
# SOURCE LINE 68
if trans.app.config.smtp_server:
# SOURCE LINE 69
__M_writer(
u' <div class="form-row">\n <label>Subscribe to mailing list:</label>\n'
)
# SOURCE LINE 71
if subscribe_checked:
# SOURCE LINE 72
__M_writer(u' ')
subscribe_check_box.checked = True
__M_writer(u'\n')
pass
# SOURCE LINE 74
__M_writer(u' ')
__M_writer(unicode(subscribe_check_box.get_html()))
__M_writer(
u'\n <p>See <a href="http://galaxyproject.org/wiki/Mailing%20Lists" target="_blank">\n all Galaxy project mailing lists</a>.</p>\n </div>\n'
)
pass
# SOURCE LINE 79
if user_type_fd_id_select_field and len(
user_type_fd_id_select_field.options) > 1:
# SOURCE LINE 80
__M_writer(
u' <div class="form-row">\n <label>User type</label>\n '
)
# SOURCE LINE 82
__M_writer(unicode(user_type_fd_id_select_field.get_html()))
__M_writer(u'\n </div>\n')
pass
# SOURCE LINE 85
if user_type_form_definition:
# SOURCE LINE 86
for field in widgets:
# SOURCE LINE 87
__M_writer(
u' <div class="form-row">\n <label>'
)
# SOURCE LINE 88
__M_writer(unicode(field['label']))
__M_writer(u'</label>\n ')
# SOURCE LINE 89
__M_writer(unicode(field['widget'].get_html()))
__M_writer(
u'\n <div class="toolParamHelp" style="clear: both;">\n '
)
# SOURCE LINE 91
__M_writer(unicode(field['helptext']))
__M_writer(
u'\n </div>\n <div style="clear: both"></div>\n </div>\n'
)
pass
# SOURCE LINE 96
if not user_type_fd_id_select_field:
# SOURCE LINE 97
__M_writer(
u' <input type="hidden" name="user_type_fd_id" value="'
)
__M_writer(
unicode(
trans.security.encode_id(
user_type_form_definition.id)))
__M_writer(u'"/>\n')
pass
pass
# SOURCE LINE 100
__M_writer(
u' <div class="form-row">\n <input type="submit" name="create_user_button" value="Submit"/>\n </div>\n </form>\n </div>\n\n'
)
return ''
finally:
context.caller_stack._pop_frame()
def render_render_registration_form(context,form_action=None):
context.caller_stack._push_frame()
try:
_import_ns = {}
_mako_get_namespace(context, '__anon_0x7f71681b4710')._populate(_import_ns, [u'render_msg'])
username = _import_ns.get('username', context.get('username', UNDEFINED))
redirect = _import_ns.get('redirect', context.get('redirect', UNDEFINED))
user_type_form_definition = _import_ns.get('user_type_form_definition', context.get('user_type_form_definition', UNDEFINED))
h = _import_ns.get('h', context.get('h', UNDEFINED))
len = _import_ns.get('len', context.get('len', UNDEFINED))
user_type_fd_id_select_field = _import_ns.get('user_type_fd_id_select_field', context.get('user_type_fd_id_select_field', UNDEFINED))
widgets = _import_ns.get('widgets', context.get('widgets', UNDEFINED))
subscribe_checked = _import_ns.get('subscribe_checked', context.get('subscribe_checked', UNDEFINED))
t = _import_ns.get('t', context.get('t', UNDEFINED))
cntrller = _import_ns.get('cntrller', context.get('cntrller', UNDEFINED))
trans = _import_ns.get('trans', context.get('trans', UNDEFINED))
email = _import_ns.get('email', context.get('email', UNDEFINED))
__M_writer = context.writer()
# SOURCE LINE 31
__M_writer(u'\n\n ')
# SOURCE LINE 33
if form_action is None:
form_action = h.url_for( controller='user', action='create', cntrller=cntrller )
from galaxy.web.form_builder import CheckboxField
subscribe_check_box = CheckboxField( 'subscribe' )
# SOURCE LINE 38
__M_writer(u'\n\n <div class="toolForm">\n <form name="registration" id="registration" action="')
# SOURCE LINE 41
__M_writer(unicode(form_action))
__M_writer(u'" method="post" >\n <div class="toolFormTitle">Create account</div>\n <div class="form-row">\n <label>Email address:</label>\n <input type="text" name="email" value="')
# SOURCE LINE 45
__M_writer(filters.html_escape(unicode(email )))
__M_writer(u'" size="40"/>\n <input type="hidden" name="redirect" value="')
# SOURCE LINE 46
__M_writer(filters.html_escape(unicode(redirect )))
__M_writer(u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Password:</label>\n <input type="password" name="password" value="" size="40"/>\n </div>\n <div class="form-row">\n <label>Confirm password:</label>\n <input type="password" name="confirm" value="" size="40"/>\n </div>\n <div class="form-row">\n <label>Public name:</label>\n <input type="text" name="username" size="40" value="')
# SOURCE LINE 58
__M_writer(filters.html_escape(unicode(username )))
__M_writer(u'"/>\n')
# SOURCE LINE 59
if t.webapp.name == 'galaxy':
# SOURCE LINE 60
__M_writer(u' <div class="toolParamHelp" style="clear: both;">\n Your public name is an identifier that will be used to generate addresses for information\n you share publicly. Public names must be at least four characters in length and contain only lower-case\n letters, numbers, and the \'-\' character.\n </div>\n')
# SOURCE LINE 65
else:
# SOURCE LINE 66
__M_writer(u' <div class="toolParamHelp" style="clear: both;">\n Your public name provides a means of identifying you publicly within this tool shed. Public\n names must be at least four characters in length and contain only lower-case letters, numbers,\n and the \'-\' character. You cannot change your public name after you have created a repository\n in this tool shed.\n </div>\n')
pass
# SOURCE LINE 73
__M_writer(u' </div>\n')
# SOURCE LINE 74
if trans.app.config.smtp_server:
# SOURCE LINE 75
__M_writer(u' <div class="form-row">\n <label>Subscribe to mailing list:</label>\n')
# SOURCE LINE 77
if subscribe_checked:
# SOURCE LINE 78
__M_writer(u' ')
subscribe_check_box.checked = True
__M_writer(u'\n')
pass
# SOURCE LINE 80
__M_writer(u' ')
__M_writer(unicode(subscribe_check_box.get_html()))
__M_writer(u'\n <p>See <a href="http://galaxyproject.org/wiki/Mailing%20Lists" target="_blank">\n all Galaxy project mailing lists</a>.</p>\n </div>\n')
pass
# SOURCE LINE 85
if user_type_fd_id_select_field and len( user_type_fd_id_select_field.options ) > 1:
# SOURCE LINE 86
__M_writer(u' <div class="form-row">\n <label>User type</label>\n ')
# SOURCE LINE 88
__M_writer(unicode(user_type_fd_id_select_field.get_html()))
__M_writer(u'\n </div>\n')
pass
# SOURCE LINE 91
if user_type_form_definition:
# SOURCE LINE 92
for field in widgets:
# SOURCE LINE 93
__M_writer(u' <div class="form-row">\n <label>')
# SOURCE LINE 94
__M_writer(unicode(field['label']))
__M_writer(u'</label>\n ')
# SOURCE LINE 95
__M_writer(unicode(field['widget'].get_html()))
__M_writer(u'\n <div class="toolParamHelp" style="clear: both;">\n ')
# SOURCE LINE 97
__M_writer(unicode(field['helptext']))
__M_writer(u'\n </div>\n <div style="clear: both"></div>\n </div>\n')
pass
# SOURCE LINE 102
if not user_type_fd_id_select_field:
# SOURCE LINE 103
__M_writer(u' <input type="hidden" name="user_type_fd_id" value="')
__M_writer(unicode(trans.security.encode_id( user_type_form_definition.id )))
__M_writer(u'"/>\n')
pass
pass
# SOURCE LINE 106
__M_writer(u' <div class="form-row">\n <input type="submit" name="create_user_button" value="Submit"/>\n </div>\n </form>\n </div>\n\n')
return ''
finally:
context.caller_stack._pop_frame()
def create(self, trans, cntrller='user', redirect_url='', refresh_frames=None, **kwd):
refresh_frames = refresh_frames or []
params = util.Params(kwd)
# If the honeypot field is not empty we are dealing with a bot.
honeypot_field = params.get('bear_field', '')
if honeypot_field != '':
return trans.show_error_message("You've been flagged as a possible bot. If you are not, please try registering again and fill the form out carefully. <a target=\"_top\" href=\"%s\">Go to the home page</a>.") % url_for('/')
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
use_panels = util.string_as_bool(kwd.get('use_panels', True))
email = util.restore_text(params.get('email', ''))
# Do not sanitize passwords, so take from kwd
# instead of params ( which were sanitized )
password = kwd.get('password', '')
confirm = kwd.get('confirm', '')
username = util.restore_text(params.get('username', ''))
subscribe = params.get('subscribe', '')
subscribe_checked = CheckboxField.is_checked(subscribe)
referer = trans.request.referer or ''
redirect = kwd.get('redirect', referer).strip()
is_admin = trans.user_is_admin
success = False
show_user_prepopulate_form = False
if not trans.app.config.allow_user_creation and not trans.user_is_admin:
message = 'User registration is disabled. Please contact your local Galaxy administrator for an account.'
if trans.app.config.error_email_to is not None:
message += f' Contact: {trans.app.config.error_email_to}'
status = 'error'
else:
# check user is allowed to register
message, status = trans.app.auth_manager.check_registration_allowed(email, username, password)
if not message:
# Create the user, save all the user info and login to Galaxy
if params.get('create_user_button', False):
# Check email and password validity
message = self.__validate(trans, email, password, confirm, username)
if not message:
# All the values are valid
message, status, user, success = self.__register(trans, subscribe_checked=subscribe_checked, **kwd)
if success and not is_admin:
# The handle_user_login() method has a call to the history_set_default_permissions() method
# (needed when logging in with a history), user needs to have default permissions set before logging in
trans.handle_user_login(user)
trans.log_event("User created a new account")
trans.log_event("User logged in")
else:
status = 'error'
registration_warning_message = trans.app.config.registration_warning_message
if success:
if is_admin:
redirect_url = web.url_for('/admin/users?status=success&message=Created new user account.')
else:
redirect_url = web.url_for('/')
return trans.fill_template('/webapps/tool_shed/user/register.mako',
cntrller=cntrller,
email=email,
username=username,
subscribe_checked=subscribe_checked,
show_user_prepopulate_form=show_user_prepopulate_form,
use_panels=use_panels,
redirect=redirect,
redirect_url=redirect_url,
refresh_frames=refresh_frames,
registration_warning_message=registration_warning_message,
message=message,
status=status)
def render_render_registration_form(context,form_action=None):
context.caller_stack._push_frame()
try:
_import_ns = {}
_mako_get_namespace(context, '__anon_0x28802690')._populate(_import_ns, [u'render_msg'])
username = _import_ns.get('username', context.get('username', UNDEFINED))
redirect = _import_ns.get('redirect', context.get('redirect', UNDEFINED))
user_type_form_definition = _import_ns.get('user_type_form_definition', context.get('user_type_form_definition', UNDEFINED))
h = _import_ns.get('h', context.get('h', UNDEFINED))
registration_warning_message = _import_ns.get('registration_warning_message', context.get('registration_warning_message', UNDEFINED))
len = _import_ns.get('len', context.get('len', UNDEFINED))
user_type_fd_id_select_field = _import_ns.get('user_type_fd_id_select_field', context.get('user_type_fd_id_select_field', UNDEFINED))
widgets = _import_ns.get('widgets', context.get('widgets', UNDEFINED))
subscribe_checked = _import_ns.get('subscribe_checked', context.get('subscribe_checked', UNDEFINED))
t = _import_ns.get('t', context.get('t', UNDEFINED))
cntrller = _import_ns.get('cntrller', context.get('cntrller', UNDEFINED))
trans = _import_ns.get('trans', context.get('trans', UNDEFINED))
email = _import_ns.get('email', context.get('email', UNDEFINED))
__M_writer = context.writer()
# SOURCE LINE 31
__M_writer(u'\n\n ')
# SOURCE LINE 33
if form_action is None:
form_action = h.url_for( controller='user', action='create', cntrller=cntrller )
from galaxy.web.form_builder import CheckboxField
subscribe_check_box = CheckboxField( 'subscribe' )
# SOURCE LINE 38
__M_writer(u'\n\n<script type="text/javascript">\n\t$(document).ready(function() {\n\n\t\tfunction validateString(test_string, type) { \n\t\t\tvar mail_re = /^(([^<>()[\\]\\\\.,;:\\s@\\"]+(\\.[^<>()[\\]\\\\.,;:\\s@\\"]+)*)|(\\".+\\"))@((\\[[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\])|(([a-zA-Z\\-0-9]+\\.)+[a-zA-Z]{2,}))$/;\n\t\t\t//var mail_re_RFC822 = /^([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x22([^\\x0d\\x22\\x5c\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x22)(\\x2e([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x22([^\\x0d\\x22\\x5c\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x22))*\\x40([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x5b([^\\x0d\\x5b-\\x5d\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x5d)(\\x2e([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x5b([^\\x0d\\x5b-\\x5d\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x5d))*$/;\n\t\t\tvar username_re = /^[a-z0-9\\-]{3,255}$/;\n\t\t\tif (type === \'email\') {\n\t\t\t\treturn mail_re.test(test_string);\n\t\t\t} else if (type === \'username\'){\n\t\t\t\treturn username_re.test(test_string);\n\t\t\t}\n\t\t} \n\n\t\tfunction renderError(message) {\n\t\tif ($(".errormessage").length === 1) {\n\t\t\t$(".errormessage").html(message)\n\t\t} else {\n\t\t\tvar div = document.createElement("div");\n\t\t\tdiv.className = "errormessage";\n\t\t\tdiv.innerHTML = message;\n\t\t\tdocument.body.insertBefore(div, document.body.firstChild);\n\t\t\t}\n\t\t}\n\n\t\t$(\'#registration\').bind(\'submit\', function(e) {\n\t\t\t$(\'#send\').attr(\'disabled\', \'disabled\');\n \n // we need this value to detect submitting at backend\n\t\t\tvar hidden_input = \'<input type="hidden" id="create_user_button" name="create_user_button" value="Submit"/>\';\n\t\t\t$("#email_input").before(hidden_input);\n\n\t\t\tvar error_text_email= \'Please enter your valid email address\';\n\t\t\tvar error_text_email_long= \'Email cannot be more than 255 characters in length\';\n\t\t\tvar error_text_username_characters = \'Public name must contain only lowercase letters, numbers and "-". It also has to be shorter than 255 characters but longer than 3.\';\n\t\t\tvar error_text_password_short = \'Please use a password of at least 6 characters\';\n\t\t\tvar error_text_password_match = "Passwords don\'t match";\n\n\t\t var validForm = true;\n\t\t \n\t\t var email = $(\'#email_input\').val();\n\t\t var name = $(\'#name_input\').val();\n\t\t if (email.length > 255){ renderError(error_text_email_long); validForm = false;}\n\t\t else if (!validateString(email,"email")){ renderError(error_text_email); validForm = false;}\n\t\t else if (!($(\'#password_input\').val() === $(\'#password_check_input\').val())){ renderError(error_text_password_match); validForm = false;}\n\t\t else if ($(\'#password_input\').val().length < 6 ){ renderError(error_text_password_short); validForm = false;}\n\t\t else if (name && !(validateString(name,"username"))){ renderError(error_text_username_characters); validForm = false;}\n\n\t \t\tif (!validForm) { \n\t\t e.preventDefault();\n\t\t // reactivate the button if the form wasn\'t submitted\n\t\t $(\'#send\').removeAttr(\'disabled\');\n\t\t }\n\t\t\t});\n\t});\n\n</script>\n <div class="toolForm">\n <form name="registration" id="registration" action="')
# SOURCE LINE 98
__M_writer(unicode(form_action))
__M_writer(u'" method="post" >\n <div class="toolFormTitle">Create account</div>\n <div class="form-row">\n <label>Email address:</label>\n <input id="email_input" type="text" name="email" value="')
# SOURCE LINE 102
__M_writer(filters.html_escape(unicode(email )))
__M_writer(u'" size="40"/>\n <input type="hidden" name="redirect" value="')
# SOURCE LINE 103
__M_writer(filters.html_escape(unicode(redirect )))
__M_writer(u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Password:</label>\n <input id="password_input" type="password" name="password" value="" size="40"/>\n </div>\n <div class="form-row">\n <label>Confirm password:</label>\n <input id="password_check_input" type="password" name="confirm" value="" size="40"/>\n </div>\n <div class="form-row">\n <label>Public name:</label>\n <input id="name_input" type="text" name="username" size="40" value="')
# SOURCE LINE 115
__M_writer(filters.html_escape(unicode(username )))
__M_writer(u'"/>\n')
# SOURCE LINE 116
if t.webapp.name == 'galaxy':
# SOURCE LINE 117
__M_writer(u' <div class="toolParamHelp" style="clear: both;">\n Your public name is an identifier that will be used to generate addresses for information\n you share publicly. Public names must be at least four characters in length and contain only lower-case\n letters, numbers, and the \'-\' character.\n </div>\n')
# SOURCE LINE 122
else:
# SOURCE LINE 123
__M_writer(u' <div class="toolParamHelp" style="clear: both;">\n Your public name provides a means of identifying you publicly within this tool shed. Public\n names must be at least four characters in length and contain only lower-case letters, numbers,\n and the \'-\' character. You cannot change your public name after you have created a repository\n in this tool shed.\n </div>\n')
pass
# SOURCE LINE 130
__M_writer(u' </div>\n')
# SOURCE LINE 131
if trans.app.config.smtp_server:
# SOURCE LINE 132
__M_writer(u' <div class="form-row">\n <label>Subscribe to mailing list:</label>\n')
# SOURCE LINE 134
if subscribe_checked:
# SOURCE LINE 135
__M_writer(u' ')
subscribe_check_box.checked = True
__M_writer(u'\n')
pass
# SOURCE LINE 137
__M_writer(u' ')
__M_writer(unicode(subscribe_check_box.get_html()))
__M_writer(u'\n <p>See <a href="http://galaxyproject.org/wiki/Mailing%20Lists" target="_blank">\n all Galaxy project mailing lists</a>.</p>\n </div>\n')
pass
# SOURCE LINE 142
if user_type_fd_id_select_field and len( user_type_fd_id_select_field.options ) >= 1:
# SOURCE LINE 143
__M_writer(u' <div class="form-row">\n <label>User type</label>\n ')
# SOURCE LINE 145
__M_writer(unicode(user_type_fd_id_select_field.get_html()))
__M_writer(u'\n </div>\n')
pass
# SOURCE LINE 148
if user_type_form_definition:
# SOURCE LINE 149
for field in widgets:
# SOURCE LINE 150
__M_writer(u' <div class="form-row">\n <label>')
# SOURCE LINE 151
__M_writer(unicode(field['label']))
__M_writer(u'</label>\n ')
# SOURCE LINE 152
__M_writer(unicode(field['widget'].get_html()))
__M_writer(u'\n <div class="toolParamHelp" style="clear: both;">\n ')
# SOURCE LINE 154
__M_writer(unicode(field['helptext']))
__M_writer(u'\n </div>\n <div style="clear: both"></div>\n </div>\n')
pass
# SOURCE LINE 159
if not user_type_fd_id_select_field:
# SOURCE LINE 160
__M_writer(u' <input type="hidden" name="user_type_fd_id" value="')
__M_writer(unicode(trans.security.encode_id( user_type_form_definition.id )))
__M_writer(u'"/>\n')
pass
pass
# SOURCE LINE 163
__M_writer(u' <div id="for_bears">\n If you see this, please leave following field blank. \n <input type="text" name="bear_field" size="1" value=""/>\n </div>\n <div class="form-row">\n <input type="submit" id="send" name="create_user_button" value="Submit"/>\n </div>\n </form>\n')
# SOURCE LINE 171
if registration_warning_message:
# SOURCE LINE 172
__M_writer(u' <div class="alert alert-danger" style="margin: 30px 12px 12px 12px;">\n ')
# SOURCE LINE 173
__M_writer(unicode(registration_warning_message))
__M_writer(u' \n </div>\n')
pass
# SOURCE LINE 176
__M_writer(u' </div>\n\n')
return ''
finally:
context.caller_stack._pop_frame()
def render_render_registration_form(context, form_action=None):
__M_caller = context.caller_stack._push_frame()
try:
_import_ns = {}
_mako_get_namespace(context, '__anon_0x7f295c474e50')._populate(
_import_ns, [u'render_msg'])
username = _import_ns.get('username',
context.get('username', UNDEFINED))
redirect = _import_ns.get('redirect',
context.get('redirect', UNDEFINED))
h = _import_ns.get('h', context.get('h', UNDEFINED))
registration_warning_message = _import_ns.get(
'registration_warning_message',
context.get('registration_warning_message', UNDEFINED))
subscribe_checked = _import_ns.get(
'subscribe_checked', context.get('subscribe_checked', UNDEFINED))
t = _import_ns.get('t', context.get('t', UNDEFINED))
cntrller = _import_ns.get('cntrller',
context.get('cntrller', UNDEFINED))
trans = _import_ns.get('trans', context.get('trans', UNDEFINED))
email = _import_ns.get('email', context.get('email', UNDEFINED))
__M_writer = context.writer()
__M_writer(u'\n\n ')
if form_action is None:
form_action = h.url_for(controller='user',
action='create',
cntrller=cntrller)
from galaxy.web.form_builder import CheckboxField
subscribe_check_box = CheckboxField('subscribe')
__M_writer(
u'\n\n <script type="text/javascript">\n $(document).ready(function() {\n\n function validateString(test_string, type) {\n var mail_re = /^(([^<>()[\\]\\\\.,;:\\s@\\"]+(\\.[^<>()[\\]\\\\.,;:\\s@\\"]+)*)|(\\".+\\"))@((\\[[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\])|(([a-zA-Z\\-0-9]+\\.)+[a-zA-Z]{2,}))$/;\n //var mail_re_RFC822 = /^([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x22([^\\x0d\\x22\\x5c\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x22)(\\x2e([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x22([^\\x0d\\x22\\x5c\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x22))*\\x40([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x5b([^\\x0d\\x5b-\\x5d\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x5d)(\\x2e([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x5b([^\\x0d\\x5b-\\x5d\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x5d))*$/;\n var username_re = /^[a-z0-9._\\-]{3,255}$/;\n if (type === \'email\') {\n return mail_re.test(test_string);\n } else if (type === \'username\'){\n return username_re.test(test_string);\n }\n }\n\n function renderError(message) {\n if (!$(".errormessage").size()) {\n $(\'<div/>\').addClass(\'errormessage\').insertBefore(\'#registrationForm\');\n }\n console.debug( $( \'#registrationForm\' ) );\n console.debug( \'.errormessage:\', $( \'.errormessage\' ) );\n $(".errormessage").html(message);\n }\n\n $("[name=\'password\']").complexify({\'minimumChars\':6}, function(valid, complexity){\n var progressBar = $(\'.progress-bar\');\n var color = valid ? \'lightgreen\' : \'red\';\n\n progressBar.css(\'background-color\', color);\n progressBar.css({\'width\': complexity + \'%\'});\n });\n\n $(\'#registration\').bind(\'submit\', function(e) {\n $(\'#send\').attr(\'disabled\', \'disabled\');\n\n // we need this value to detect submitting at backend\n var hidden_input = \'<input type="hidden" id="create_user_button" name="create_user_button" value="Submit"/>\';\n $("#email_input").before(hidden_input);\n\n var error_text_email = \'The format of the email address is not correct.\';\n var error_text_email_long = \'Email address cannot be more than 255 characters in length.\';\n var error_text_username_characters = "Public name must contain only lowercase letters, numbers, \'.\', \'_\' and \'-\'. It also has to be between 3 and 255 characters in length.";\n var error_text_password_short = \'Use a password of at least 6 characters\';\n var error_text_password_match = "Passwords don\'t match";\n\n var validForm = true;\n\n var email = $(\'#email_input\').val();\n var name = $(\'#name_input\').val();\n if (email.length > 255){ renderError(error_text_email_long); validForm = false;}\n else if (!validateString(email,"email")){ renderError(error_text_email); validForm = false;}\n else if (!($(\'#password_input\').val() === $(\'#password_check_input\').val())){ renderError(error_text_password_match); validForm = false;}\n else if ($(\'#password_input\').val().length < 6 ){ renderError(error_text_password_short); validForm = false;}\n else if (name && !(validateString(name,"username"))){ renderError(error_text_username_characters); validForm = false;}\n\n if (!validForm) {\n e.preventDefault();\n // reactivate the button if the form wasn\'t submitted\n $(\'#send\').removeAttr(\'disabled\');\n }\n });\n });\n </script>\n\n <div id="registrationForm" class="toolForm">\n <form name="registration" id="registration" action="'
)
__M_writer(unicode(form_action))
__M_writer(
u'" method="post" >\n <div class="toolFormTitle">Create account</div>\n <div class="form-row">\n <label>Email address:</label>\n <input id="email_input" type="text" name="email" value="'
)
__M_writer(filters.html_escape(unicode(email)))
__M_writer(
u'" size="40"/>\n <input type="hidden" name="redirect" value="'
)
__M_writer(filters.html_escape(unicode(redirect)))
__M_writer(
u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Password:</label>\n <input id="password_input" type="password" name="password" value="" size="40"/>\n </div>\n <div class="progress">\n <div id="complexity-bar" class="progress-bar" role="progressbar">\n Strength\n </div>\n </div>\n <div class="form-row">\n <label>Confirm password:</label>\n <input id="password_check_input" type="password" name="confirm" value="" size="40"/>\n </div>\n <div class="form-row">\n <label>Public name:</label>\n <input id="name_input" type="text" name="username" size="40" value="'
)
__M_writer(filters.html_escape(unicode(username)))
__M_writer(u'"/>\n')
if t.webapp.name == 'galaxy':
__M_writer(
u' <div class="toolParamHelp" style="clear: both;">\n Your public name is an identifier that will be used to generate addresses for information\n you share publicly. Public names must be at least three characters in length and contain only\n lower-case letters, numbers, dots, underscores, and dashes (\'.\', \'_\', \'-\').\n </div>\n'
)
else:
__M_writer(
u' <div class="toolParamHelp" style="clear: both;">\n Your public name provides a means of identifying you publicly within this tool shed. Public\n names must be at least three characters in length and contain only lower-case letters, numbers,\n dots, underscores, and dashes (\'.\', \'_\', \'-\'). You cannot change your public name after you have\n created a repository in this Tool Shed.\n </div>\n'
)
__M_writer(u' </div>\n')
if trans.app.config.smtp_server and trans.app.config.mailing_join_addr:
__M_writer(
u' <div class="form-row">\n <label>Subscribe to mailing list:</label>\n'
)
if subscribe_checked:
__M_writer(u' ')
subscribe_check_box.checked = True
__M_writer(u'\n')
__M_writer(u' ')
__M_writer(unicode(subscribe_check_box.get_html()))
__M_writer(
u'\n <p>See <a href="http://galaxyproject.org/wiki/Mailing%20Lists" target="_blank">\n all Galaxy project mailing lists</a>.</p>\n </div>\n'
)
__M_writer(
u' <div id="for_bears">\n If you see this, please leave following field blank.\n <input type="text" name="bear_field" size="1" value=""/>\n </div>\n <div class="form-row">\n <input type="submit" id="send" name="create_user_button" value="Submit"/>\n </div>\n </form>\n'
)
if registration_warning_message:
__M_writer(
u' <div class="alert alert-danger" style="margin: 30px 12px 12px 12px;">\n '
)
__M_writer(unicode(registration_warning_message))
__M_writer(u'\n </div>\n')
__M_writer(u' </div>\n\n')
return ''
finally:
context.caller_stack._pop_frame()
def render_body(context,**pageargs):
context.caller_stack._push_frame()
try:
__M_locals = __M_dict_builtin(pageargs=pageargs)
_import_ns = {}
_mako_get_namespace(context, '__anon_0x15b7f310')._populate(_import_ns, [u'render_msg'])
status = _import_ns.get('status', context.get('status', UNDEFINED))
render_msg = _import_ns.get('render_msg', context.get('render_msg', UNDEFINED))
name = _import_ns.get('name', context.get('name', UNDEFINED))
in_users = _import_ns.get('in_users', context.get('in_users', UNDEFINED))
h = _import_ns.get('h', context.get('h', UNDEFINED))
def render_select(name,options):
return render_render_select(context.locals_(__M_locals),name,options)
create_group_for_role_checked = _import_ns.get('create_group_for_role_checked', context.get('create_group_for_role_checked', UNDEFINED))
out_groups = _import_ns.get('out_groups', context.get('out_groups', UNDEFINED))
in_groups = _import_ns.get('in_groups', context.get('in_groups', UNDEFINED))
out_users = _import_ns.get('out_users', context.get('out_users', UNDEFINED))
message = _import_ns.get('message', context.get('message', UNDEFINED))
description = _import_ns.get('description', context.get('description', UNDEFINED))
__M_writer = context.writer()
# SOURCE LINE 1
__M_writer(u'\n')
# SOURCE LINE 2
__M_writer(u'\n\n')
# SOURCE LINE 11
__M_writer(u'\n\n')
# SOURCE LINE 19
__M_writer(u'\n\n<script type="text/javascript">\n $().ready(function() { \n $(\'#groups_add_button\').click(function() {\n return !$(\'#out_groups option:selected\').remove().appendTo(\'#in_groups\');\n });\n $(\'#groups_remove_button\').click(function() {\n return !$(\'#in_groups option:selected\').remove().appendTo(\'#out_groups\');\n });\n $(\'#users_add_button\').click(function() {\n return !$(\'#out_users option:selected\').remove().appendTo(\'#in_users\');\n });\n $(\'#users_remove_button\').click(function() {\n return !$(\'#in_users option:selected\').remove().appendTo(\'#out_users\');\n });\n $(\'form#associate_role_group_user\').submit(function() {\n $(\'#in_groups option\').each(function(i) {\n $(this).attr("selected", "selected");\n });\n $(\'#in_users option\').each(function(i) {\n $(this).attr("selected", "selected");\n });\n });\n //Temporary removal of select2 for inputs -- refactor this later.\n $(\'select\').select2("destroy");\n });\n</script>\n\n')
# SOURCE LINE 48
from galaxy.web.form_builder import CheckboxField
create_group_for_role_checkbox = CheckboxField( 'create_group_for_role' )
__M_locals_builtin_stored = __M_locals_builtin()
__M_locals.update(__M_dict_builtin([(__M_key, __M_locals_builtin_stored[__M_key]) for __M_key in ['create_group_for_role_checkbox','CheckboxField'] if __M_key in __M_locals_builtin_stored]))
# SOURCE LINE 51
__M_writer(u'\n\n')
# SOURCE LINE 53
if message:
# SOURCE LINE 54
__M_writer(u' ')
__M_writer(unicode(render_msg( message, status )))
__M_writer(u'\n')
pass
# SOURCE LINE 56
__M_writer(u'\n<div class="toolForm">\n <div class="toolFormTitle">Create Role</div>\n <div class="toolFormBody">\n <form name="associate_role_group_user" id="associate_role_group_user" action="')
# SOURCE LINE 60
__M_writer(unicode(h.url_for(controller='admin', action='create_role' )))
__M_writer(u'" method="post" >\n <div class="form-row">\n <label>Name:</label>\n <input name="name" type="textfield" value="')
# SOURCE LINE 63
__M_writer(unicode(name))
__M_writer(u'" size=40"/>\n </div>\n <div class="form-row">\n <label>Description:</label>\n <input name="description" type="textfield" value="')
# SOURCE LINE 67
__M_writer(unicode(description))
__M_writer(u'" size=40"/>\n </div>\n <div class="form-row">\n <div style="float: left; margin-right: 10px;">\n <label>Groups associated with new role</label>\n ')
# SOURCE LINE 72
__M_writer(unicode(render_select( "in_groups", in_groups )))
__M_writer(u'<br/>\n <input type="submit" id="groups_remove_button" value=">>"/>\n </div>\n <div>\n <label>Groups not associated with new role</label>\n ')
# SOURCE LINE 77
__M_writer(unicode(render_select( "out_groups", out_groups )))
__M_writer(u'<br/>\n <input type="submit" id="groups_add_button" value="<<"/>\n </div>\n </div>\n <div class="form-row">\n <div style="float: left; margin-right: 10px;">\n <label>Users associated with new role</label>\n ')
# SOURCE LINE 84
__M_writer(unicode(render_select( "in_users", in_users )))
__M_writer(u'<br/>\n <input type="submit" id="users_remove_button" value=">>"/>\n </div>\n <div>\n <label>Users not associated with new role</label>\n ')
# SOURCE LINE 89
__M_writer(unicode(render_select( "out_users", out_users )))
__M_writer(u'<br/>\n <input type="submit" id="users_add_button" value="<<"/>\n </div>\n </div>\n <div class="form-row">\n')
# SOURCE LINE 94
if create_group_for_role_checked:
# SOURCE LINE 95
__M_writer(u' ')
create_group_for_role_checkbox.checked = True
__M_locals_builtin_stored = __M_locals_builtin()
__M_locals.update(__M_dict_builtin([(__M_key, __M_locals_builtin_stored[__M_key]) for __M_key in [] if __M_key in __M_locals_builtin_stored]))
__M_writer(u'\n')
pass
# SOURCE LINE 97
__M_writer(u' ')
__M_writer(unicode(create_group_for_role_checkbox.get_html()))
__M_writer(u' Create a new group of the same name for this role\n </div>\n <div class="form-row">\n <input type="submit" name="create_role_button" value="Save"/>\n </div>\n </form>\n </div>\n</div>\n')
return ''
finally:
context.caller_stack._pop_frame()
def render_render_registration_form(context, form_action=None):
context.caller_stack._push_frame()
try:
_import_ns = {}
_mako_get_namespace(context, '__anon_0x28802690')._populate(
_import_ns, [u'render_msg'])
username = _import_ns.get('username',
context.get('username', UNDEFINED))
redirect = _import_ns.get('redirect',
context.get('redirect', UNDEFINED))
user_type_form_definition = _import_ns.get(
'user_type_form_definition',
context.get('user_type_form_definition', UNDEFINED))
h = _import_ns.get('h', context.get('h', UNDEFINED))
registration_warning_message = _import_ns.get(
'registration_warning_message',
context.get('registration_warning_message', UNDEFINED))
len = _import_ns.get('len', context.get('len', UNDEFINED))
user_type_fd_id_select_field = _import_ns.get(
'user_type_fd_id_select_field',
context.get('user_type_fd_id_select_field', UNDEFINED))
widgets = _import_ns.get('widgets', context.get('widgets', UNDEFINED))
subscribe_checked = _import_ns.get(
'subscribe_checked', context.get('subscribe_checked', UNDEFINED))
t = _import_ns.get('t', context.get('t', UNDEFINED))
cntrller = _import_ns.get('cntrller',
context.get('cntrller', UNDEFINED))
trans = _import_ns.get('trans', context.get('trans', UNDEFINED))
email = _import_ns.get('email', context.get('email', UNDEFINED))
__M_writer = context.writer()
# SOURCE LINE 31
__M_writer(u'\n\n ')
# SOURCE LINE 33
if form_action is None:
form_action = h.url_for(controller='user',
action='create',
cntrller=cntrller)
from galaxy.web.form_builder import CheckboxField
subscribe_check_box = CheckboxField('subscribe')
# SOURCE LINE 38
__M_writer(
u'\n\n<script type="text/javascript">\n\t$(document).ready(function() {\n\n\t\tfunction validateString(test_string, type) { \n\t\t\tvar mail_re = /^(([^<>()[\\]\\\\.,;:\\s@\\"]+(\\.[^<>()[\\]\\\\.,;:\\s@\\"]+)*)|(\\".+\\"))@((\\[[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\.[0-9]{1,3}\\])|(([a-zA-Z\\-0-9]+\\.)+[a-zA-Z]{2,}))$/;\n\t\t\t//var mail_re_RFC822 = /^([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x22([^\\x0d\\x22\\x5c\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x22)(\\x2e([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x22([^\\x0d\\x22\\x5c\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x22))*\\x40([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x5b([^\\x0d\\x5b-\\x5d\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x5d)(\\x2e([^\\x00-\\x20\\x22\\x28\\x29\\x2c\\x2e\\x3a-\\x3c\\x3e\\x40\\x5b-\\x5d\\x7f-\\xff]+|\\x5b([^\\x0d\\x5b-\\x5d\\x80-\\xff]|\\x5c[\\x00-\\x7f])*\\x5d))*$/;\n\t\t\tvar username_re = /^[a-z0-9\\-]{3,255}$/;\n\t\t\tif (type === \'email\') {\n\t\t\t\treturn mail_re.test(test_string);\n\t\t\t} else if (type === \'username\'){\n\t\t\t\treturn username_re.test(test_string);\n\t\t\t}\n\t\t} \n\n\t\tfunction renderError(message) {\n\t\tif ($(".errormessage").length === 1) {\n\t\t\t$(".errormessage").html(message)\n\t\t} else {\n\t\t\tvar div = document.createElement("div");\n\t\t\tdiv.className = "errormessage";\n\t\t\tdiv.innerHTML = message;\n\t\t\tdocument.body.insertBefore(div, document.body.firstChild);\n\t\t\t}\n\t\t}\n\n\t\t$(\'#registration\').bind(\'submit\', function(e) {\n\t\t\t$(\'#send\').attr(\'disabled\', \'disabled\');\n \n // we need this value to detect submitting at backend\n\t\t\tvar hidden_input = \'<input type="hidden" id="create_user_button" name="create_user_button" value="Submit"/>\';\n\t\t\t$("#email_input").before(hidden_input);\n\n\t\t\tvar error_text_email= \'Please enter your valid email address\';\n\t\t\tvar error_text_email_long= \'Email cannot be more than 255 characters in length\';\n\t\t\tvar error_text_username_characters = \'Public name must contain only lowercase letters, numbers and "-". It also has to be shorter than 255 characters but longer than 3.\';\n\t\t\tvar error_text_password_short = \'Please use a password of at least 6 characters\';\n\t\t\tvar error_text_password_match = "Passwords don\'t match";\n\n\t\t var validForm = true;\n\t\t \n\t\t var email = $(\'#email_input\').val();\n\t\t var name = $(\'#name_input\').val();\n\t\t if (email.length > 255){ renderError(error_text_email_long); validForm = false;}\n\t\t else if (!validateString(email,"email")){ renderError(error_text_email); validForm = false;}\n\t\t else if (!($(\'#password_input\').val() === $(\'#password_check_input\').val())){ renderError(error_text_password_match); validForm = false;}\n\t\t else if ($(\'#password_input\').val().length < 6 ){ renderError(error_text_password_short); validForm = false;}\n\t\t else if (name && !(validateString(name,"username"))){ renderError(error_text_username_characters); validForm = false;}\n\n\t \t\tif (!validForm) { \n\t\t e.preventDefault();\n\t\t // reactivate the button if the form wasn\'t submitted\n\t\t $(\'#send\').removeAttr(\'disabled\');\n\t\t }\n\t\t\t});\n\t});\n\n</script>\n <div class="toolForm">\n <form name="registration" id="registration" action="'
)
# SOURCE LINE 98
__M_writer(unicode(form_action))
__M_writer(
u'" method="post" >\n <div class="toolFormTitle">Create account</div>\n <div class="form-row">\n <label>Email address:</label>\n <input id="email_input" type="text" name="email" value="'
)
# SOURCE LINE 102
__M_writer(filters.html_escape(unicode(email)))
__M_writer(
u'" size="40"/>\n <input type="hidden" name="redirect" value="'
)
# SOURCE LINE 103
__M_writer(filters.html_escape(unicode(redirect)))
__M_writer(
u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Password:</label>\n <input id="password_input" type="password" name="password" value="" size="40"/>\n </div>\n <div class="form-row">\n <label>Confirm password:</label>\n <input id="password_check_input" type="password" name="confirm" value="" size="40"/>\n </div>\n <div class="form-row">\n <label>Public name:</label>\n <input id="name_input" type="text" name="username" size="40" value="'
)
# SOURCE LINE 115
__M_writer(filters.html_escape(unicode(username)))
__M_writer(u'"/>\n')
# SOURCE LINE 116
if t.webapp.name == 'galaxy':
# SOURCE LINE 117
__M_writer(
u' <div class="toolParamHelp" style="clear: both;">\n Your public name is an identifier that will be used to generate addresses for information\n you share publicly. Public names must be at least four characters in length and contain only lower-case\n letters, numbers, and the \'-\' character.\n </div>\n'
)
# SOURCE LINE 122
else:
# SOURCE LINE 123
__M_writer(
u' <div class="toolParamHelp" style="clear: both;">\n Your public name provides a means of identifying you publicly within this tool shed. Public\n names must be at least four characters in length and contain only lower-case letters, numbers,\n and the \'-\' character. You cannot change your public name after you have created a repository\n in this tool shed.\n </div>\n'
)
pass
# SOURCE LINE 130
__M_writer(u' </div>\n')
# SOURCE LINE 131
if trans.app.config.smtp_server:
# SOURCE LINE 132
__M_writer(
u' <div class="form-row">\n <label>Subscribe to mailing list:</label>\n'
)
# SOURCE LINE 134
if subscribe_checked:
# SOURCE LINE 135
__M_writer(u' ')
subscribe_check_box.checked = True
__M_writer(u'\n')
pass
# SOURCE LINE 137
__M_writer(u' ')
__M_writer(unicode(subscribe_check_box.get_html()))
__M_writer(
u'\n <p>See <a href="http://galaxyproject.org/wiki/Mailing%20Lists" target="_blank">\n all Galaxy project mailing lists</a>.</p>\n </div>\n'
)
pass
# SOURCE LINE 142
if user_type_fd_id_select_field and len(
user_type_fd_id_select_field.options) >= 1:
# SOURCE LINE 143
__M_writer(
u' <div class="form-row">\n <label>User type</label>\n '
)
# SOURCE LINE 145
__M_writer(unicode(user_type_fd_id_select_field.get_html()))
__M_writer(u'\n </div>\n')
pass
# SOURCE LINE 148
if user_type_form_definition:
# SOURCE LINE 149
for field in widgets:
# SOURCE LINE 150
__M_writer(
u' <div class="form-row">\n <label>'
)
# SOURCE LINE 151
__M_writer(unicode(field['label']))
__M_writer(u'</label>\n ')
# SOURCE LINE 152
__M_writer(unicode(field['widget'].get_html()))
__M_writer(
u'\n <div class="toolParamHelp" style="clear: both;">\n '
)
# SOURCE LINE 154
__M_writer(unicode(field['helptext']))
__M_writer(
u'\n </div>\n <div style="clear: both"></div>\n </div>\n'
)
pass
# SOURCE LINE 159
if not user_type_fd_id_select_field:
# SOURCE LINE 160
__M_writer(
u' <input type="hidden" name="user_type_fd_id" value="'
)
__M_writer(
unicode(
trans.security.encode_id(
user_type_form_definition.id)))
__M_writer(u'"/>\n')
pass
pass
# SOURCE LINE 163
__M_writer(
u' <div id="for_bears">\n If you see this, please leave following field blank. \n <input type="text" name="bear_field" size="1" value=""/>\n </div>\n <div class="form-row">\n <input type="submit" id="send" name="create_user_button" value="Submit"/>\n </div>\n </form>\n'
)
# SOURCE LINE 171
if registration_warning_message:
# SOURCE LINE 172
__M_writer(
u' <div class="alert alert-danger" style="margin: 30px 12px 12px 12px;">\n '
)
# SOURCE LINE 173
__M_writer(unicode(registration_warning_message))
__M_writer(u' \n </div>\n')
pass
# SOURCE LINE 176
__M_writer(u' </div>\n\n')
return ''
finally:
context.caller_stack._pop_frame()
def render_render_registration_form(context,form_action=None):
context.caller_stack._push_frame()
try:
_import_ns = {}
_mako_get_namespace(context, '__anon_0x6877ad0')._populate(_import_ns, [u'render_msg'])
username = _import_ns.get('username', context.get('username', UNDEFINED))
trans = _import_ns.get('trans', context.get('trans', UNDEFINED))
user_type_form_definition = _import_ns.get('user_type_form_definition', context.get('user_type_form_definition', UNDEFINED))
confirm = _import_ns.get('confirm', context.get('confirm', UNDEFINED))
h = _import_ns.get('h', context.get('h', UNDEFINED))
user_type_fd_id_select_field = _import_ns.get('user_type_fd_id_select_field', context.get('user_type_fd_id_select_field', UNDEFINED))
widgets = _import_ns.get('widgets', context.get('widgets', UNDEFINED))
subscribe_checked = _import_ns.get('subscribe_checked', context.get('subscribe_checked', UNDEFINED))
referer = _import_ns.get('referer', context.get('referer', UNDEFINED))
cntrller = _import_ns.get('cntrller', context.get('cntrller', UNDEFINED))
webapp = _import_ns.get('webapp', context.get('webapp', UNDEFINED))
password = _import_ns.get('password', context.get('password', UNDEFINED))
email = _import_ns.get('email', context.get('email', UNDEFINED))
__M_writer = context.writer()
# SOURCE LINE 24
__M_writer(u'\n\n ')
# SOURCE LINE 26
if form_action is None:
form_action = h.url_for( controller='user', action='create', cntrller=cntrller )
from galaxy.web.form_builder import CheckboxField
subscribe_check_box = CheckboxField( 'subscribe' )
# SOURCE LINE 31
__M_writer(u'\n\n <div class="toolForm">\n <form name="registration" id="registration" action="')
# SOURCE LINE 34
__M_writer(unicode(form_action))
__M_writer(u'" method="post" >\n <div class="toolFormTitle">Create account</div>\n <div class="form-row">\n <label>Email address:</label>\n <input type="text" name="email" value="')
# SOURCE LINE 38
__M_writer(unicode(email))
__M_writer(u'" size="40"/>\n <input type="hidden" name="webapp" value="')
# SOURCE LINE 39
__M_writer(unicode(webapp))
__M_writer(u'" size="40"/>\n <input type="hidden" name="referer" value="')
# SOURCE LINE 40
__M_writer(unicode(referer))
__M_writer(u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Password:</label>\n <input type="password" name="password" value="')
# SOURCE LINE 44
__M_writer(unicode(password))
__M_writer(u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Confirm password:</label>\n <input type="password" name="confirm" value="')
# SOURCE LINE 48
__M_writer(unicode(confirm))
__M_writer(u'" size="40"/>\n </div>\n <div class="form-row">\n <label>Public name:</label>\n <input type="text" name="username" size="40" value="')
# SOURCE LINE 52
__M_writer(unicode(username))
__M_writer(u'"/>\n <div class="toolParamHelp" style="clear: both;">\n Your public name is an identifier that will be used to generate addresses for information\n you share publicly. Public names must be at least four characters in length and contain only lower-case\n letters, numbers, and the \'-\' character.\n </div>\n </div>\n')
# SOURCE LINE 59
if trans.app.config.smtp_server:
# SOURCE LINE 60
__M_writer(u' <div class="form-row">\n <label>Subscribe to mailing list:</label>\n')
# SOURCE LINE 62
if subscribe_checked:
# SOURCE LINE 63
__M_writer(u' ')
subscribe_check_box.checked = True
__M_writer(u'\n')
# SOURCE LINE 65
__M_writer(u' ')
__M_writer(unicode(subscribe_check_box.get_html()))
__M_writer(u'\n </div>\n')
# SOURCE LINE 68
if user_type_fd_id_select_field:
# SOURCE LINE 69
__M_writer(u' <div class="form-row">\n <label>User type</label>\n ')
# SOURCE LINE 71
__M_writer(unicode(user_type_fd_id_select_field.get_html()))
__M_writer(u'\n </div>\n')
# SOURCE LINE 74
if user_type_form_definition:
# SOURCE LINE 75
for field in widgets:
# SOURCE LINE 76
__M_writer(u' <div class="form-row">\n <label>')
# SOURCE LINE 77
__M_writer(unicode(field['label']))
__M_writer(u'</label>\n ')
# SOURCE LINE 78
__M_writer(unicode(field['widget'].get_html()))
__M_writer(u'\n <div class="toolParamHelp" style="clear: both;">\n ')
# SOURCE LINE 80
__M_writer(unicode(field['helptext']))
__M_writer(u'\n </div>\n <div style="clear: both"></div>\n </div>\n')
# SOURCE LINE 85
if not user_type_fd_id_select_field:
# SOURCE LINE 86
__M_writer(u' <input type="hidden" name="user_type_fd_id" value="')
__M_writer(unicode(trans.security.encode_id( user_type_form_definition.id )))
__M_writer(u'"/>\n')
# SOURCE LINE 89
__M_writer(u' <div class="form-row">\n <input type="submit" name="create_user_button" value="Submit"/>\n </div>\n </form>\n </div>\n\n')
return ''
finally:
context.caller_stack._pop_frame()
def create_role(self, trans, **kwd):
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
name = util.restore_text(params.get('name', ''))
description = util.restore_text(params.get('description', ''))
in_users = util.listify(params.get('in_users', []))
out_users = util.listify(params.get('out_users', []))
in_groups = util.listify(params.get('in_groups', []))
out_groups = util.listify(params.get('out_groups', []))
create_group_for_role = params.get('create_group_for_role', '')
create_group_for_role_checked = CheckboxField.is_checked(
create_group_for_role)
ok = True
if params.get('create_role_button', False):
if not name or not description:
message = "Enter a valid name and a description."
status = 'error'
ok = False
elif trans.sa_session.query(trans.app.model.Role).filter(
trans.app.model.Role.table.c.name == name).first():
message = "Role names must be unique and a role with that name already exists, so choose another name."
status = 'error'
ok = False
else:
# Create the role
role, num_in_groups = trans.app.security_agent.create_role(
name,
description,
in_users,
in_groups,
create_group_for_role=create_group_for_role_checked)
message = "Role '%s' has been created with %d associated users and %d associated groups. " \
% (role.name, len(in_users), num_in_groups)
if create_group_for_role_checked:
message += 'One of the groups associated with this role is the newly created group with the same name.'
trans.response.send_redirect(
web.url_for(controller='admin',
action='roles',
message=util.sanitize_text(message),
status='done'))
if ok:
for user in trans.sa_session.query(trans.app.model.User) \
.filter(trans.app.model.User.table.c.deleted == false()) \
.order_by(trans.app.model.User.table.c.email):
out_users.append((user.id, user.email))
for group in trans.sa_session.query(trans.app.model.Group) \
.filter(trans.app.model.Group.table.c.deleted == false()) \
.order_by(trans.app.model.Group.table.c.name):
out_groups.append((group.id, group.name))
return trans.fill_template(
'/webapps/tool_shed/admin/dataset_security/role/role_create.mako',
name=name,
description=description,
in_users=in_users,
out_users=out_users,
in_groups=in_groups,
out_groups=out_groups,
create_group_for_role_checked=create_group_for_role_checked,
message=message,
status=status)
def create_group(self, trans, **kwd):
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
name = util.restore_text(params.get('name', ''))
in_users = util.listify(params.get('in_users', []))
out_users = util.listify(params.get('out_users', []))
in_roles = util.listify(params.get('in_roles', []))
out_roles = util.listify(params.get('out_roles', []))
create_role_for_group = params.get('create_role_for_group', '')
create_role_for_group_checked = CheckboxField.is_checked(
create_role_for_group)
ok = True
if params.get('create_group_button', False):
if not name:
message = "Enter a valid name."
status = 'error'
ok = False
elif trans.sa_session.query(trans.app.model.Group).filter(
trans.app.model.Group.table.c.name == name).first():
message = "Group names must be unique and a group with that name already exists, so choose another name."
status = 'error'
ok = False
else:
# Create the group
group = trans.app.model.Group(name=name)
trans.sa_session.add(group)
trans.sa_session.flush()
# Create the UserRoleAssociations
for user in [
trans.sa_session.query(trans.app.model.User).get(x)
for x in in_users
]:
uga = trans.app.model.UserGroupAssociation(user, group)
trans.sa_session.add(uga)
# Create the GroupRoleAssociations
for role in [
trans.sa_session.query(trans.app.model.Role).get(x)
for x in in_roles
]:
gra = trans.app.model.GroupRoleAssociation(group, role)
trans.sa_session.add(gra)
if create_role_for_group_checked:
# Create the role
role = trans.app.model.Role(
name=name, description='Role for group %s' % name)
trans.sa_session.add(role)
# Associate the role with the group
gra = trans.model.GroupRoleAssociation(group, role)
trans.sa_session.add(gra)
num_in_roles = len(in_roles) + 1
else:
num_in_roles = len(in_roles)
trans.sa_session.flush()
message = "Group '%s' has been created with %d associated users and %d associated roles. " \
% (group.name, len(in_users), num_in_roles)
if create_role_for_group_checked:
message += 'One of the roles associated with this group is the newly created role with the same name.'
trans.response.send_redirect(
web.url_for(controller='admin',
action='groups',
message=util.sanitize_text(message),
status='done'))
if ok:
for user in trans.sa_session.query(trans.app.model.User) \
.filter(trans.app.model.User.table.c.deleted == false()) \
.order_by(trans.app.model.User.table.c.email):
out_users.append((user.id, user.email))
for role in trans.sa_session.query(trans.app.model.Role) \
.filter(trans.app.model.Role.table.c.deleted == false()) \
.order_by(trans.app.model.Role.table.c.name):
out_roles.append((role.id, role.name))
return trans.fill_template(
'/webapps/tool_shed/admin/dataset_security/group/group_create.mako',
name=name,
in_users=in_users,
out_users=out_users,
in_roles=in_roles,
out_roles=out_roles,
create_role_for_group_checked=create_role_for_group_checked,
message=message,
status=status)
def create_group(self, trans, **kwd):
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
name = util.restore_text(params.get('name', ''))
in_users = util.listify(params.get('in_users', []))
out_users = util.listify(params.get('out_users', []))
in_roles = util.listify(params.get('in_roles', []))
out_roles = util.listify(params.get('out_roles', []))
create_role_for_group = params.get('create_role_for_group', '')
create_role_for_group_checked = CheckboxField.is_checked(create_role_for_group)
ok = True
if params.get('create_group_button', False):
if not name:
message = "Enter a valid name."
status = 'error'
ok = False
elif trans.sa_session.query(trans.app.model.Group).filter(trans.app.model.Group.table.c.name == name).first():
message = "Group names must be unique and a group with that name already exists, so choose another name."
status = 'error'
ok = False
else:
# Create the group
group = trans.app.model.Group(name=name)
trans.sa_session.add(group)
trans.sa_session.flush()
# Create the UserRoleAssociations
for user in [trans.sa_session.query(trans.app.model.User).get(x) for x in in_users]:
uga = trans.app.model.UserGroupAssociation(user, group)
trans.sa_session.add(uga)
# Create the GroupRoleAssociations
for role in [trans.sa_session.query(trans.app.model.Role).get(x) for x in in_roles]:
gra = trans.app.model.GroupRoleAssociation(group, role)
trans.sa_session.add(gra)
if create_role_for_group_checked:
# Create the role
role = trans.app.model.Role(name=name, description='Role for group %s' % name)
trans.sa_session.add(role)
# Associate the role with the group
gra = trans.model.GroupRoleAssociation(group, role)
trans.sa_session.add(gra)
num_in_roles = len(in_roles) + 1
else:
num_in_roles = len(in_roles)
trans.sa_session.flush()
message = "Group '%s' has been created with %d associated users and %d associated roles. " \
% (group.name, len(in_users), num_in_roles)
if create_role_for_group_checked:
message += 'One of the roles associated with this group is the newly created role with the same name.'
trans.response.send_redirect(web.url_for(controller='admin',
action='groups',
message=util.sanitize_text(message),
status='done'))
if ok:
for user in trans.sa_session.query(trans.app.model.User) \
.filter(trans.app.model.User.table.c.deleted == false()) \
.order_by(trans.app.model.User.table.c.email):
out_users.append((user.id, user.email))
for role in trans.sa_session.query(trans.app.model.Role) \
.filter(trans.app.model.Role.table.c.deleted == false()) \
.order_by(trans.app.model.Role.table.c.name):
out_roles.append((role.id, role.name))
return trans.fill_template('/webapps/tool_shed/admin/dataset_security/group/group_create.mako',
name=name,
in_users=in_users,
out_users=out_users,
in_roles=in_roles,
out_roles=out_roles,
create_role_for_group_checked=create_role_for_group_checked,
message=message,
status=status)
