def test_plugin_templates(self):
""""""
mock_app_dir = galaxy_mock.MockDir({
'plugins': {
'plugin1': {
'templates': {
'test.mako': contents1
},
}
}
})
mock_app = galaxy_mock.MockApp(root=mock_app_dir.root_path)
plugin_mgr = PageServingPluginManager(mock_app,
'test',
directories_setting='plugins')
self.assertEqual(plugin_mgr.plugins.keys(), ['plugin1'])
plugin = plugin_mgr.plugins['plugin1']
rendered = plugin_mgr.fill_template(galaxy_mock.MockTrans(),
plugin,
'test.mako',
what='Hey',
you='Ho',
say='HeyHey HoHo')
self.assertEqual(rendered, 'Hey Ho HeyHey HoHo')
mock_app_dir.remove()
def setUp( self ):
super(DataToolParameterTestCase, self).setUp()
self.test_history = model.History()
self.app.model.context.add( self.test_history )
self.app.model.context.flush()
self.trans = galaxy_mock.MockTrans( history=self.test_history )
self.multiple = False
self.optional = False
self._param = None
def test_interactive_environ_plugin_load(self):
"""
"""
mock_app_dir = galaxy_mock.MockDir({
'plugins': {
'ipython': {
'config': {
'ipython.xml': ipython_config
},
'templates': {
'ipython.mako': ipython_template
}
},
}
})
mock_app = galaxy_mock.MockApp(root=mock_app_dir.root_path)
plugin_mgr = VisualizationsRegistry(
mock_app,
directories_setting='plugins',
template_cache_dir=mock_app_dir.root_path)
# use a mock request factory - this will be written into the filled template to show it was used
plugin_mgr.IE_REQUEST_FACTORY = lambda t, p: 'mock_ie'
expected_plugins_path = os.path.join(mock_app_dir.root_path, 'plugins')
expected_plugin_names = ['ipython']
self.assertEqual(plugin_mgr.base_url, 'visualizations')
self.assertItemsEqual(plugin_mgr.directories, [expected_plugins_path])
self.assertItemsEqual(plugin_mgr.plugins.keys(), expected_plugin_names)
ipython_ie = plugin_mgr.plugins['ipython']
config = ipython_ie.get('config')
self.assertEqual(ipython_ie.name, 'ipython')
self.assertEqual(config.get('plugin_type'), 'interactive_environment')
# get_api_key needs a user, fill_template a trans
user = model.User(email="*****@*****.**",
password="******")
trans = galaxy_mock.MockTrans(user=user)
# should return the (new) api key for the above user (see the template above)
response = plugin_mgr.fill_template(trans, ipython_ie, 'ipython.mako')
response.strip()
self.assertIsInstance(response, basestring)
self.assertTrue('-' in response)
ie_request, api_key = response.split('-')
self.assertEqual(ie_request, 'mock_ie')
match = re.match(r'[a-f0-9]{32}', api_key)
self.assertIsNotNone(match)
self.assertEqual(match.span(), (0, 32))
mock_app_dir.remove()
def test_script_entry(self):
""""""
script_entry_config = test_utils.clean_multiline_string("""\
<?xml version="1.0" encoding="UTF-8"?>
<visualization name="js-test">
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
</data_source>
</data_sources>
<entry_point entry_point_type="script" data-main="one" src="bler"></entry_point>
</visualization>
""")
mock_app_dir = galaxy_mock.MockDir({
'plugins': {
'jstest': {
'config': {
'jstest.xml': script_entry_config
},
'static': {}
},
}
})
mock_app = galaxy_mock.MockApp(root=mock_app_dir.root_path)
plugin_mgr = VisualizationsRegistry(
mock_app,
directories_setting='plugins',
template_cache_dir=template_cache_dir)
script_entry = plugin_mgr.plugins['jstest']
self.assertIsInstance(script_entry, plugin.ScriptVisualizationPlugin)
self.assertEqual(script_entry.name, 'jstest')
self.assertTrue(script_entry.serves_static)
self.assertTrue(script_entry.serves_templates)
self.assertEqual(script_entry.static_path,
os.path.join(script_entry.path, 'static'))
trans = galaxy_mock.MockTrans()
script_entry._set_up_template_plugin(mock_app_dir.root_path,
[addtional_templates_dir])
response = script_entry._render({}, trans=trans, embedded=True)
# print response
self.assertTrue('src="bler"' in response)
self.assertTrue('type="text/javascript"' in response)
self.assertTrue('data-main="one"' in response)
mock_app_dir.remove()
def test_render(self):
"""
"""
# use the python in a template to test for variables that should be there
# TODO: gotta be a better way
testing_template = test_utils.clean_multiline_string("""\
<%
found_all = True
should_have = [
title, visualization_name, visualization_display_name,
visualization_id, saved_visualization,
query, config,
embedded,
vars
]
for var in should_have:
try:
var = str( var )
except NameError as name_err:
found_all = False
break
%>
${ found_all }
""")
mock_app_dir = galaxy_mock.MockDir({
'cache': {},
'template.mako': testing_template
})
mock_app = galaxy_mock.MockApp(root=mock_app_dir.root_path)
plugin = self.plugin_class(mock_app, '', 'myvis',
{"name": "Vlad News Bears"})
# somewhat easier to set this up by hand
plugin.config['entry_point'] = {'file': 'template.mako'}
plugin.template_path = mock_app_dir.root_path
plugin.template_lookup = plugin._build_template_lookup(
mock_app_dir.root_path)
response = plugin.render(trans=galaxy_mock.MockTrans(app=mock_app))
self.assertIsInstance(response, string_types)
self.assertEqual(response.strip(), "True")
def set_up_mocks(self):
self.trans = galaxy_mock.MockTrans(admin_users=admin_users)
self.app = self.trans.app
def test_interactive_environ_plugin_load( self ):
"""
"""
ipython_config = test_utils.clean_multiline_string( """\
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE interactive_environment SYSTEM "../../interactive_environments.dtd">
<interactive_environment name="IPython">
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test>
<test type="isinstance" test_attr="datatype" result_type="datatype">data.Text</test>
<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<template>ipython.mako</template>
</interactive_environment>
""" )
mock_app_dir = {
'plugins': {
'ipython': {
'config': {
'ipython.xml': ipython_config
},
'templates': {}
},
},
}
# going to use a fake template here to simplify testing
ipython_template = "${ ie_request }-${ get_api_key() }"
mock_app_dir[ 'plugins' ][ 'ipython' ][ 'templates' ][ 'ipython.mako' ] = ipython_template
# so that we don't create a cached version of that fake template in the real mako caches
# we'll set up a cache in the temp dir
mock_app_dir[ 'caches' ] = {}
# and make sure the vis reg uses that
mock_app_dir = galaxy_mock.MockDir( mock_app_dir )
mock_app = galaxy_mock.MockApp( root=mock_app_dir.root_path )
plugin_mgr = VisualizationsRegistry( mock_app,
directories_setting='plugins',
template_cache_dir=os.path.join( mock_app_dir.root_path, 'caches' ) )
# ...then start testing
expected_plugins_path = os.path.join( mock_app_dir.root_path, 'plugins' )
expected_plugin_names = [ 'ipython' ]
self.assertEqual( plugin_mgr.base_url, 'visualizations' )
self.assertEqual( plugin_mgr.directories, [ expected_plugins_path ] )
self.assertEqual( sorted(plugin_mgr.plugins.keys()), expected_plugin_names )
ipython = plugin_mgr.plugins[ 'ipython' ]
config = ipython.config
self.assertEqual( ipython.name, 'ipython' )
self.assertEqual( config.get( 'plugin_type' ), 'interactive_environment' )
# get_api_key needs a user, fill_template a trans
user = model.User( email="*****@*****.**", password="******" )
trans = galaxy_mock.MockTrans( user=user )
# use a mock request factory - this will be written into the filled template to show it was used
ipython.INTENV_REQUEST_FACTORY = lambda t, p: 'mock'
# should return the (new) api key for the above user (see the template above)
response = ipython._render( {}, trans=trans )
response.strip()
self.assertIsInstance( response, string_types )
self.assertTrue( '-' in response )
ie_request, api_key = response.split( '-' )
self.assertEqual( ie_request, 'mock' )
match = re.match( r'[a-f0-9]{32}', api_key )
self.assertIsNotNone( match )
self.assertEqual( match.span(), ( 0, 32 ) )
mock_app_dir.remove()