def main():
# Handle command line options
options = setup_parser()
options.config_dict['include parent infos'] = True
options.config_dict['dataset hash keys'] = options.config_dict[
'dataset hash keys'].replace(',', ' ')
if options.opts.jobhash:
options.config_dict['dataset hash keys'] = options.config_dict[
'dataset hash keys'] + ' CMSSW_CONFIG_JOBHASH'
if options.opts.discovery:
options.config_dict['dataset name pattern'] = '@DS_KEY@'
if len(options.args) != 1:
utils.exitWithUsage(
options.parser.usage(),
'Neither work directory nor config file specified!')
# Lock file in case several instances of this program are running
mutex = FileMutex(os.path.join(options.opts.tempdir, 'datasetDBSAdd.lock'))
try:
# 1) Get dataset information
blocks = discover_blocks(options)
# 2) Filter datasets
blocks = filter_blocks(options.opts, blocks)
# 3) Process datasets (migrate parents and register
process_dbs3_json_blocks(
options.opts,
create_dbs3_json_blocks(options.opts, sort_dataset_blocks(blocks)))
finally:
mutex.release()
def main(opts, args):
if len(args) == 0:
utils.exitWithUsage('Dataset path not specified!')
datasetPath = args[0]
if '*' in datasetPath:
dbs3 = Plugin.createInstance('DBS3Provider', getConfig(), datasetPath, None)
toProcess = dbs3.getCMSDatasetsImpl(datasetPath)
else:
toProcess = [datasetPath]
nProd = Plugin.getClass('NickNameProducer').createInstance(opts.producer, getConfig())
utils.printTabular(
[(0, 'Nickname'), (1, 'Dataset')],
lmap(lambda ds: {0: nProd.getName('', ds, None), 1: ds}, toProcess), 'll')
def main(opts, args):
if len(args) == 0:
utils.exitWithUsage('Dataset path not specified!')
datasetPath = args[0]
if '*' in datasetPath:
dbs3 = Plugin.createInstance('DBS3Provider', getConfig(), datasetPath,
None)
toProcess = dbs3.getCMSDatasetsImpl(datasetPath)
else:
toProcess = [datasetPath]
nProd = Plugin.getClass('NickNameProducer').createInstance(
opts.producer, getConfig())
utils.printTabular([(0, 'Nickname'), (1, 'Dataset')],
lmap(lambda ds: {
0: nProd.getName('', ds, None),
1: ds
}, toProcess), 'll')
def main():
# Handle command line options
options = setup_parser()
options.config_dict['include parent infos'] = True
options.config_dict['dataset hash keys'] = options.config_dict['dataset hash keys'].replace(',', ' ')
if options.opts.jobhash:
options.config_dict['dataset hash keys'] = options.config_dict['dataset hash keys'] + ' CMSSW_CONFIG_JOBHASH'
if options.opts.discovery:
options.config_dict['dataset name pattern'] = '@DS_KEY@'
if len(options.args) != 1:
utils.exitWithUsage(options.parser.usage(), 'Neither work directory nor config file specified!')
# Lock file in case several instances of this program are running
mutex = FileMutex(os.path.join(options.opts.tempdir, 'datasetDBSAdd.lock'))
try:
# 1) Get dataset information
blocks = discover_blocks(options)
# 2) Filter datasets
blocks = filter_blocks(options.opts, blocks)
# 3) Process datasets (migrate parents and register
process_dbs3_json_blocks(options.opts, create_dbs3_json_blocks(options.opts, sort_dataset_blocks(blocks)))
finally:
mutex.release()
import sys, optparse
from gcSupport import utils, Config, TaskModule, JobManager, JobSelector, Report, GCError, parseOptions, handleException, getConfig
parser = optparse.OptionParser()
parser.add_option('', '--report', dest='reportClass', default='GUIReport')
parser.add_option('-J', '--job-selector', dest='selector', default=None)
parser.add_option('', '--str', dest='string', default=None)
#parser.add_option('-m', '--map', dest='showMap', default=False, action='store_true',
# help='Draw map of sites')
#parser.add_option('-C', '--cpu', dest='showCPU', default=False, action='store_true',
# help='Display time overview')
#Report.addOptions(parser)
(opts, args) = parseOptions(parser)
if len(args) != 1:
utils.exitWithUsage('%s [options] <config file>' % sys.argv[0])
def main():
# try to open config file
config = getConfig(args[0], section = 'global')
# Initialise task module
task = config.getClass(['task', 'module'], cls = TaskModule).getInstance()
# Initialise job database
jobManagerCls = config.getClass('job manager', 'SimpleJobManager', cls = JobManager, tags = [task])
jobDB = jobManagerCls.getInstance(task, None).jobDB
log = utils.ActivityLog('Filtering job entries')
selected = jobDB.getJobs(JobSelector.create(opts.selector, task = task))
del log
# | limitations under the License.
import sys
from datasetListFromX import addDatasetListOptions, discoverDataset
from gcSupport import Options, scriptOptions, utils
parser = Options(usage = '%s [OPTIONS] <config file / work directory>')
parser.addText(None, 'J', 'job-selector', dest = 'external job selector', default = '',
help = 'Specify which jobs to process')
parser.addText(None, 'i', 'info-scanner',
help = 'Specify which info scanner to run')
parser.addText(None, 'm', 'event-mode', dest = 'mode', default = 'CMSSW-Out',
help = 'Specify how to determine events - available: [CMSSW-Out], CMSSW-In, DataMod')
parser.addText(None, 'l', 'lfn', dest = 'lfn marker', default = '/store/',
help = 'Assume everything starting with marker to be a logical file name')
parser.addBool(None, 'c', 'config', dest = 'include config infos', default = False,
help = 'CMSSW specific: Add configuration data to metadata')
parser.addBool(None, 'p', 'parents', dest = 'include parent infos', default = False,
help = 'CMSSW specific: Add parent infos to metadata')
addDatasetListOptions(parser)
options = scriptOptions(parser, arg_keys = ['dataset'])
# Positional parameters override options
if len(options.args) == 0:
utils.exitWithUsage(parser.usage())
tmp = {'cmssw-out': 'CMSSW_EVENTS_WRITE', 'cmssw-in': 'CMSSW_EVENTS_READ', 'datamod': 'MAX_EVENTS'}
if options.opts.info_scanner:
options.config_dict['scanner'] = options.opts.info_scanner.replace(',', ' ')
options.config_dict['events key'] = tmp.get(options.config_dict['mode'].lower(), '')
sys.exit(discoverDataset('GCProvider', options.config_dict))
parser = Options(usage = '%s [OPTIONS] <config file>')
parser.addBool(None, 'L', 'report-list', default = False, help = 'List available report classes')
parser.addBool(None, 'T', 'use-task', default = False, help = 'Forward task information to report')
parser.addText(None, 'R', 'report', default = 'GUIReport')
parser.addText(None, 'J', 'job-selector', default = None)
parser.addText(None, ' ', 'string', default = '')
options = scriptOptions(parser)
Report = Plugin.getClass('Report')
if options.opts.report_list:
sys.stderr.write('Available report classes:\n')
displayPluginList(getPluginList('Report'))
if len(options.args) != 1:
utils.exitWithUsage(parser.usage())
def main(opts, args):
# try to open config file
config = getConfig(args[0], section = 'global')
# Initialise task module
task = None
if opts.use_task:
task = config.getPlugin('workflow', 'Workflow:global', cls = 'Workflow', pargs = ('task',)).task
# Initialise job database
jobDB = config.getPlugin('job database', 'TextFileJobDB', cls = 'JobDB')
activity = Activity('Filtering job entries')
selected = jobDB.getJobs(JobSelector.create(opts.job_selector, task = task))
activity.finish()
parser.addBool(None, 's', 'list-storage', default = False, help = 'Show list of locations where data is stored')
parser.addBool(None, 'm', 'metadata', default = False, help = 'Get metadata infomation of dataset files')
parser.addBool(None, 'M', 'block-metadata', default = False, help = 'Get common metadata infomation of dataset blocks')
parser.addBool(None, 'O', 'ordered', default = False, help = 'Sort dataset blocks and files')
parser.addText(None, 'p', 'provider', default = '', help = 'Default dataset provider')
parser.addText(None, 'C', 'settings', default = '', help = 'Specify config file as source of detailed dataset settings')
parser.addText(None, 'S', 'save', default = '', help = 'Saves dataset information to specified file')
parser.addBool(None, 'i', 'info', default = False, help = 'Gives machine readable info of given dataset(s)')
parser.addBool(None, 'c', 'config-entry', default = False, help = 'Gives config file entries to run over given dataset(s)')
parser.addBool(None, 'n', 'config-nick', default = False, help = 'Use dataset path to derive nickname in case it it undefined')
parser.addText(None, 'L', 'location', default = 'hostname', help = 'Format of location information')
options = scriptOptions(parser)
# we need exactly one positional argument (dataset path)
if len(options.args) != 1:
utils.exitWithUsage(usage)
# Disable threaded queries
def noThread(desc, fun, *args, **kargs):
fun(*args, **kargs)
return type('DummyThread', (), {'join': lambda self: None})()
thread_tools.start_thread = noThread
def get_dataset_config(opts, args):
dataset = args[0].strip()
if os.path.exists(dataset):
opts.provider = 'ListProvider'
else:
opts.provider = 'DBS3Provider'
cfgSettings = {'dbs blacklist T1 *': 'False', 'remove empty blocks *': 'False',
'remove empty files *': 'False', 'location format *': opts.location,
def main():
usage = '%s [OPTIONS] <config file / work directory>' % sys.argv[0]
parser = optparse.OptionParser(usage=usage)
parser.add_option('-G', '--globaltag', dest='globaltag', default='crab2_tag', help='Specify global tag')
parser.add_option('-F', '--input', dest='inputFile', default=None,
help='Specify dbs input file to use instead of scanning job output')
# parser.add_option('-k', '--key-select', dest='dataset key select', default='',
# help='Specify dataset keys to process')
parser.add_option('-c', '--continue-migration', dest='continue_migration', default=False, action='store_true',
help='Continue an already started migration')
ogDiscover = optparse.OptionGroup(parser, 'Discovery options - ignored in case dbs input file is specified', '')
ogDiscover.add_option('-n', '--name', dest='dataset name pattern', default='',
help='Specify dbs path name - Example: DataSet_@NICK@_@VAR@')
ogDiscover.add_option('-T', '--datatype', dest='datatype', default=None,
help='Supply dataset type in case cmssw report did not specify it - valid values: "mc" or "data"')
ogDiscover.add_option('-m', '--merge', dest='merge parents', default=False, action='store_true',
help='Merge output files from different parent blocks into a single block [Default: Keep boundaries]')
ogDiscover.add_option('-j', '--jobhash', dest='useJobHash', default=False, action='store_true',
help='Use hash of all config files in job for dataset key calculation')
ogDiscover.add_option('-u', '--unique-cfg', dest='uniqueCfg', default=False, action='store_true',
help='Circumvent edmConfigHash collisions so each dataset is stored with unique config information')
ogDiscover.add_option('-P', '--parent', dest='parent source', default='',
help='Override parent information source - to bootstrap a reprocessing on local files')
ogDiscover.add_option('-H', '--hash-keys', dest='dataset hash keys', default='',
help='Included additional variables in dataset hash calculation')
parser.add_option_group(ogDiscover)
ogDiscover2 = optparse.OptionGroup(parser, 'Discovery options II - only available when config file is used', '')
ogDiscover2.add_option('-J', '--job-selector', dest='selected', default=None,
help='Specify dataset(s) to process')
parser.add_option_group(ogDiscover2)
ogMode = optparse.OptionGroup(parser, 'Processing mode', '')
ogMode.add_option('-b', '--batch', dest='batch', default=False, action='store_true',
help='Enable non-interactive batch mode [Default: Interactive mode]')
ogMode.add_option('-d', '--discovery', dest='discovery', default=False, action='store_true',
help='Enable discovery mode - just collect file information and exit')
ogMode.add_option('', '--tempdir', dest='tmpDir', default='',
help='Override temp directory')
ogMode.add_option('-i', '--no-import', dest='doImport', default=True, action='store_false',
help='Disable import of new datasets into target DBS instance - only temporary xml files are created, ' +
'which can be added later via datasetDBSTool.py [Default: Import datasets]')
parser.add_option_group(ogMode)
ogInc = optparse.OptionGroup(parser, 'Incremental adding of files to DBS', '')
ogInc.add_option('-I', '--incremental', dest='incremental', default=False, action='store_true',
help='Skip import of existing files - Warning: this destroys coherent block structure!')
# ogInc.add_option('-o', '--open-blocks', dest='closeBlock', default=True, action='store_false',
# help='Keep blocks open for addition of further files [Default: Close blocks]')
parser.add_option_group(ogInc)
ogInst = optparse.OptionGroup(parser, 'DBS instance handling', '')
ogInst.add_option('-t', '--target-instance', dest='dbsTarget',
default='https://cmsweb.cern.ch/dbs/prod/phys03',
help='Specify target dbs instance url')
ogInst.add_option('-s', '--source-instance', dest='dbsSource',
default='https://cmsweb.cern.ch/dbs/prod/global',
help='Specify source dbs instance url(s), where parent datasets are taken from')
parser.add_option_group(ogInst)
ogDbg = optparse.OptionGroup(parser, 'Display options', '')
ogDbg.add_option('-D', '--display-dataset', dest='display_data', default=None,
help='Display information associated with dataset key(s) (accepts "all")')
ogDbg.add_option('-C', '--display-config', dest='display_cfg', default=None,
help='Display information associated with config hash(es) (accepts "all")')
ogDbg.add_option('-v', '--verbose', dest='verbosity', default=0, action='count',
help='Increase verbosity')
parser.add_option_group(ogDbg)
(opts, args) = parser.parse_args()
utils.verbosity(opts.verbosity)
setattr(opts, 'include parent infos', True)
setattr(opts, 'importLumi', True)
setattr(opts, 'dataset hash keys', getattr(opts, 'dataset hash keys').replace(',', ' '))
if opts.useJobHash:
setattr(opts, 'dataset hash keys', getattr(opts, 'dataset hash keys') + ' CMSSW_CONFIG_JOBHASH')
# 0) Get work directory, create dbs dump directory
if len(args) != 1:
utils.exitWithUsage(usage, 'Neither work directory nor config file specified!')
if os.path.isdir(args[0]):
opts.workDir = os.path.abspath(os.path.normpath(args[0]))
else:
opts.workDir = getConfig(configFile=args[0]).getWorkPath()
if not opts.tmpDir:
opts.tmpDir = os.path.join(opts.workDir, 'dbs')
if not os.path.exists(opts.tmpDir):
os.mkdir(opts.tmpDir)
# Lock file in case several instances of this program are running
mutex = FileMutex(os.path.join(opts.tmpDir, 'datasetDBSAdd.lock'))
# 1) Get dataset information
if opts.inputFile:
provider = DataProvider.getInstance('ListProvider', getConfig(), opts.inputFile, None)
else:
config = getConfig(configDict = {'dataset': dict(parser.values.__dict__)})
if opts.discovery:
config.set('dataset name pattern', '@DS_KEY@')
provider = DataProvider.getInstance('DBSInfoProvider', config, args[0], None)
provider.saveState(os.path.join(opts.tmpDir, 'dbs.dat'))
if opts.discovery:
sys.exit(os.EX_OK)
blocks = provider.getBlocks()
# 2) Filter datasets
if opts.incremental:
# Query target DBS for all found datasets and perform dataset resync with "supposed" state
dNames = set(map(lambda b: b[DataProvider.Dataset], blocks))
dNames = filter(lambda ds: hasDataset(opts.dbsTarget, ds), dNames)
config = getConfig(configDict = {None: {'dbs instance': opts.dbsTarget}})
oldBlocks = reduce(operator.add, map(lambda ds: DBSApiv2(config, None, ds, None).getBlocks(), dNames), [])
(blocksAdded, blocksMissing, blocksChanged) = DataProvider.resyncSources(oldBlocks, blocks)
if len(blocksMissing) or len(blocksChanged):
if not utils.getUserBool(' * WARNING: Block structure has changed! Continue?', False):
sys.exit(os.EX_OK)
# Search for blocks which were partially added and generate "pseudo"-blocks with left over files
setOldBlocks = set(map(lambda x: x[DataProvider.BlockName], oldBlocks))
setAddedBlocks = set(map(lambda x: x[DataProvider.BlockName], blocksAdded))
blockCollision = set.intersection(setOldBlocks, setAddedBlocks)
if blockCollision and opts.closeBlock: # Block are closed and contents have changed
for block in blocksAdded:
if block[DataProvider.BlockName] in blockCollision:
block[DataProvider.BlockName] = utils.strGuid(md5(str(time.time())).hexdigest())
blocks = blocksAdded
# 3) Display dataset properties
if opts.display_data or opts.display_cfg:
raise APIError('Not yet reimplemented')
#set-up logging
logging.basicConfig(format='%(levelname)s: %(message)s')
logger = logging.getLogger('dbs3-migration')
logger.addHandler(NullHandler())
logger.setLevel(logging.DEBUG)
#set-up dbs clients
dbs3_target_client = DBS3LiteClient(url=opts.dbsTarget)
dbs3_source_client = DBS3LiteClient(url=opts.dbsSource)
dbs3_migration_queue = DBS3MigrationQueue()
for blockDump in generateDBS3BlockDumps(opts, blocks):
if not opts.continue_migration:
###initiate the dbs3 to dbs3 migration of parent blocks
logger.debug('Checking parentage for block: %s' % blockDump['block']['block_name'])
unique_parent_lfns = set((parent[u'parent_logical_file_name'] for parent in blockDump[u'file_parent_list']))
unique_blocks = set((block['block_name'] for parent_lfn in unique_parent_lfns
for block in dbs3_source_client.listBlocks(logical_file_name=parent_lfn)))
for block_to_migrate in unique_blocks:
if dbs3_target_client.listBlocks(block_name=block_to_migrate):
#block already at destination
logger.debug('Block %s is already at destination' % block_to_migrate)
continue
migration_task = MigrationTask(block_name=block_to_migrate,
migration_url='https://cmsweb.cern.ch/dbs/prod/global/DBSReader',
dbs_client=dbs3_target_client)
try:
dbs3_migration_queue.add_migration_task(migration_task)
except AlreadyQueued as aq:
logger.debug(aq.message)
dbs3_migration_queue.save_to_disk(os.path.join(opts.tmpDir, 'dbs3_migration.pkl'))
else:
try:
dbs3_migration_queue = DBS3MigrationQueue.read_from_disk(os.path.join(opts.tmpDir,
'dbs3_migration.pkl'))
except IOError as io_err:
msg = "Probably, there is no DBS 3 migration for this dataset ongoing, Dude!"
logger.exception('%s\n%s' % (io_err.message, msg))
raise
#wait for all parent blocks migrated to dbs3
do_migration(dbs3_migration_queue)
#insert block into dbs3
dbs3_target_client.insertBulkBlock(blockDump)