def doCalibration(self, calibrant='Si', calibrant_x=0, calibrant_y=0, calibrant_exposure=1.0):
if self.calibration_required:
mycalibrant=Finder.getInstance().find("calibrant_name")
mycalibrant.moveTo(calibrant)
dummyScannable=DummyScannable("dummyScannable")
#additional_plugin_list = pixium.getAdditionalPluginList()[0]
#Detector calibration
if self.calibration_required:
self.stage_x.moveTo(calibrant_x)
self.stage_y.moveTo(calibrant_y)
scan([dummyScannable, 1, 1, 1, self.pixium, calibrant_exposure])
#TODO GDA .nxs file, not EPICS h5 file
scan_data_point_provider = InterfaceProvider.getScanDataPointProvider()
self.calibrant_file_name = scan_data_point_provider.getLastScanDataPoint().getCurrentFilename()
#calibrant_file_name = additional_plugin_list.getFullFileName()
#do detector calibration on cluster serevrs
builder = OSCommandRunnerBuilder.defaults()
builder=builder.command([LocalProperties.get("org.opengda.lde.pixium.data.reduction.script","/dls_sw/apps/i11-scripts/bin/LDE-RunFromGDAAtEndOfScan.sh")])
builder=builder.keepOutput(True)
builder = builder.inputFilename(self.calibrant_file_name)
builder = builder.outputFilename(os.path.splitext(self.calibrant_file_name)[0]+"_output.log")
builder=builder.noTimeout()
builder.build()
self.calibration_required=False
def doSampleDataCollection(self, sample_x_start=None, sample_x_stop=None, sample_x_step=None, sample_y_start=None, sample_y_stop=None, sample_y_step=None, sample_exposure=1.0):
# sample diffraction data
args=[]
if sample_x_start is not None or sample_x_stop is not None or sample_x_step is not None:
args.append(self.stage_x)
if sample_y_start is not None:
args.append(sample_x_start)
if sample_y_stop is not None:
args.append(sample_x_stop)
if sample_y_step is not None:
args.append(sample_x_step)
if sample_y_start is not None or sample_y_stop is not None or sample_y_step is not None:
args.append(self.stage_y)
if sample_y_start is not None:
args.append(sample_y_start)
if sample_y_stop is not None:
args.append(sample_y_stop)
if sample_y_step is not None:
args.append(sample_y_step)
if args.count!=0:
args.append(self.pixium)
args.append(sample_exposure)
scan(args)
#sample_file_name = additional_plugin_list.getFullFileName()
scan_data_point_provider = InterfaceProvider.getScanDataPointProvider()
sample_file_name = scan_data_point_provider.getLastScanDataPoint().getCurrentFilename()
#builder = OSCommandRunnerBuilder.defaults()
builder = OSCommandRunnerBuilder.defaults()
builder=builder.command([LocalProperties.get("org.opengda.lde.pixium.data.reduction.script","/dls_sw/apps/i11-scripts/bin/LDE-RunFromGDAAtEndOfScan.sh"),self.calibrant_file_name])
builder=builder.keepOutput(True)
builder = builder.inputFilename(sample_file_name)
builder = builder.outputFilename(os.path.splitext(sample_file_name)[0]+"_output.log")
builder=builder.noTimeout()
builder.build()
