def test_rel_mock_get_metadata(self):
index = GDCIndexClient(uri=base_url)
index._get_metadata(['small_rel'])
assert index.get_access('small_rel') == uuids['small_rel']['access']
assert index.get_filesize('small_rel') == uuids['small_rel']['file_size']
assert index.get_md5sum('small_rel') == uuids['small_rel']['md5sum']
assert index.get_related_files('small_rel') == uuids['small_rel']['related_files']
assert index.get_annotations('small_rel') == []
def test_big_and_small_no_rel_no_ann_separate_small_files(self):
index = GDCIndexClient(uri=base_url)
bigs, smalls = index.separate_small_files(
['big_no_friends', 'small_no_friends'],
HTTP_CHUNK_SIZE,
related_files=True,
annotations=True)
assert index.get_access('big_no_friends') == uuids['big_no_friends']['access']
assert index.get_filesize('big_no_friends') == uuids['big_no_friends']['file_size']
assert index.get_md5sum('big_no_friends') == uuids['big_no_friends']['md5sum']
assert index.get_related_files('big_no_friends') == []
assert index.get_annotations('big_no_friends') == []
assert index.get_access('small_no_friends') == uuids['small_no_friends']['access']
assert index.get_filesize('small_no_friends') == uuids['small_no_friends']['file_size']
assert index.get_md5sum('small_no_friends') == uuids['small_no_friends']['md5sum']
assert index.get_related_files('small_no_friends') == []
assert index.get_annotations('small_no_friends') == []
assert bigs == ['big_no_friends']
assert smalls == [['small_no_friends']]
def test_big_and_small_full_separate_small_files(self):
index = GDCIndexClient(uri=base_url)
bigs, smalls = index.separate_small_files(
['big', 'small'],
HTTP_CHUNK_SIZE,
related_files=True,
annotations=True)
assert index.get_access('big') == uuids['big']['access']
assert index.get_filesize('big') == uuids['big']['file_size']
assert index.get_md5sum('big') == uuids['big']['md5sum']
assert index.get_related_files('big') == uuids['big']['related_files']
assert index.get_annotations('big') == uuids['big']['annotations']
assert index.get_access('small') == uuids['small']['access']
assert index.get_filesize('small') == uuids['small']['file_size']
assert index.get_md5sum('small') == uuids['small']['md5sum']
assert index.get_related_files('small') == uuids['small']['related_files']
assert index.get_annotations('small') == uuids['small']['annotations']
# if a uuid has related files or annotations then they
# are downloaded as big files
assert bigs == ['big', 'small']
assert smalls == []
def test_small_invalid_separate_small_files(self):
""" If no metadata can be found about a file, attempt a
download using the big file method
"""
invalid = 'invalid uuid'
index = GDCIndexClient(uri=base_url)
bigs, smalls = index.separate_small_files(
[invalid],
HTTP_CHUNK_SIZE,
related_files=True,
annotations=True)
assert index.get_access(invalid) == None
assert index.get_filesize(invalid) == None
assert index.get_md5sum(invalid) == None
assert index.get_related_files(invalid) == []
assert index.get_annotations(invalid) == []
assert bigs == [invalid]
assert smalls == []
def test_small_full_separate_small_files(self):
""" Currently if a file has related or annotation files
the dtt processes it as if it were a big file so that
it goes through the old method of downloading,
regardless of size.
NOTE: This will probably change in the future.
"""
index = GDCIndexClient(uri=base_url)
bigs, smalls = index.separate_small_files(
['small'],
HTTP_CHUNK_SIZE,
related_files=True,
annotations=True)
assert index.get_access('small') == uuids['small']['access']
assert index.get_filesize('small') == uuids['small']['file_size']
assert index.get_md5sum('small') == uuids['small']['md5sum']
assert index.get_related_files('small') == uuids['small']['related_files']
assert index.get_annotations('small') == uuids['small']['annotations']
assert bigs == ['small']
assert smalls == []
def test_no_metadata_get_filesize(self):
index = GDCIndexClient(uri=base_url)
results = index.get_access(uuids['small'])
assert results == None