def TestAnonymizer(filename, verbose=False):
r = gdcm.Reader()
r.SetFileName(filename)
sucess = r.Read()
if (not sucess): return 1
#print r.GetFile().GetDataSet()
ano = gdcm.Anonymizer()
ano.SetFile(r.GetFile())
# 1. Replace with another value
ano.Replace(gdcm.Tag(0x0010, 0x0010), "Test^Anonymize")
# 2. Remove a tag (even a SQ)
ano.Remove(gdcm.Tag(0x0008, 0x2112))
# 3. Make a tag empty
ano.Empty(gdcm.Tag(0x0008, 0x0070))
# Call the main function:
sucess = ano.RemovePrivateTags() # do it !
if (not sucess): return 1
# Check we can also change value from binary field
#ano.Replace( gdcm.Tag(0x0010,0x0010), "16", gdcm. )
# Let's check if our anonymization worked:
if verbose:
print(ano.GetFile().GetDataSet())
# So at that point r.GetFile() was modified, let's simply passed it to the Writer:
# First find a place where to write it out:
subdir = "TestAnonymizerPython"
tmpdir = gdcm.Testing.GetTempDirectory(subdir)
if not gdcm.System.FileIsDirectory(tmpdir):
gdcm.System.MakeDirectory(tmpdir)
# Ok directory does exist now, extract the name of the input file, and merge it in
# our newly created tmpdir:
outfilename = gdcm.Testing.GetTempFilename(filename, subdir)
w = gdcm.Writer()
w.SetFileName(outfilename)
w.SetFile(r.GetFile())
w.SetCheckFileMetaInformation(False)
sucess = w.Write()
if (not sucess): return 1
if verbose:
print("Success to write: %s" % outfilename)
return sucess
def anonymizeOneFile(self, fin, fout):
reader = gdcm.Reader()
reader.SetFileName(fin)
ret = reader.Read()
if not ret:
return (False, "File could not been read")
(ar, af) = self._anonymizeOneFile(reader.GetFile())
if not ar:
return (False, "Error while anonymizing")
writer = gdcm.Writer()
writer.SetFileName(fout)
writer.SetFile(af)
writer.Write()
return (True, "OK")
def example1():
b = Gdcmanon.Gdcmanon(key = 'openssl/key.key', cert = 'openssl/cert.pem', \
salt = '55')
anon = b.getInstance()
r = gdcm.Reader()
r.SetFileName('input.dcm')
r.Read()
anon.SetFile(r.GetFile())
if not anon.BasicApplicationLevelConfidentialityProfile(
True): # False to decrypt
print("Error during anonymization", file=sys.stderr)
else:
w = gdcm.Writer()
w.SetFileName('out.dcm')
w.SetFile(anon.GetFile())
w.Write()
def save_as(self, fname, obj=None):
""" Save DICOM file given a GDCM DICOM object.
Examples of a GDCM DICOM object:
* gdcm.Writer()
* gdcm.Reader()
* gdcm.Anonymizer()
:param fname: DICOM file name to be saved
:param obj: DICOM object to be saved, if None, Anonymizer() is used
"""
writer = gdcm.Writer()
writer.SetFileName(fname)
if obj is None and self._anon_obj:
obj = self._anon_obj
else:
raise ValueError("Need DICOM object, e.g. obj=gdcm.Anonymizer()")
writer.SetFile(obj.GetFile())
if not writer.Write():
raise IOError("Could not save DICOM file")
return True
return "MyTP"
if __name__ == "__main__":
import sys
gdcm.FileMetaInformation.SetSourceApplicationEntityTitle("DumbAnonymizer")
gdcm.UIDGenerator.SetRoot(THERALYS_ORG_ROOT)
r = gdcm.Reader()
filename = sys.argv[1]
r.SetFileName(filename)
if not r.Read(): sys.exit(1)
obj = MyAnon()
w = gdcm.Writer()
ano = gdcm.Anonymizer()
ano.SetFile(r.GetFile())
ano.RemoveGroupLength()
for tag, rule in tag_rules.items():
if rule[0] == 'Value':
print tag, rule
ano.Replace(gdcm.Tag(tag[0], tag[1]), rule[1])
elif rule[0] == 'Method':
print tag, rule
# result = locals()[rule[1]]()
methodname = rule[1]
if hasattr(obj, methodname):
_member = getattr(obj, methodname)
result = _member()
ano.Replace(gdcm.Tag(tag[0], tag[1]), result)
ano.Remove( tag ) # special handling gen = gdcm.UIDGenerator() ano.Replace( gdcm.Tag(0x0008,0x9123), gen.Generate() ) #ano.Empty( gdcm.Tag(0x0040,0x0555) ) # # uid = gen.Generate() # de.SetTag( gdcm.Tag(0x0008,0x0018) ) # de.SetByteStringValue( uid ) # ds.Insert( de ) # init FMI now: #fmi = f.GetHeader() #ts = gdcm.TransferSyntax() #print ts #fmi.SetDataSetTransferSyntax( ts ) # default #print fmi.GetDataSetTransferSyntax() #de.SetTag( gdcm.Tag(0x0002,0x0010) ) #uid = "1.2.840.10008.1.2" #de.SetByteStringValue( uid ) #fmi.Insert( de ) # f.SetHeader( r.GetFile().GetHeader() ) writer = gdcm.Writer() writer.SetFile( ano.GetFile() ) writer.SetFileName( "rawstorage.dcm" ); writer.Write()
