def test_invalid_check_existing_file_status():
'''
Test the values returned by input that is invalid
'''
entity = synapseclient.Entity(name='second.txt', id='syn2345', md5='44444')
entity.properties.versionNumber = '1'
entities = [entity]
file_status = input_to_database.check_existing_file_status(
mock_csv_query_result(validation_statusdf),
mock_csv_query_result(error_trackerdf), entities)
assert not file_status['to_validate']
assert file_status['status_list'] == ['INVALID']
assert file_status['error_list'] == ['Invalid file format']
def test_nostorederrors_check_existing_file_status():
'''
If there is no error uploaded, must re-validate file
'''
entity = synapseclient.Entity(name='second.txt', id='syn2345', md5='44444')
entity.properties.versionNumber = '1'
entities = [entity]
file_status = input_to_database.check_existing_file_status(
mock_csv_query_result(validation_statusdf),
mock_csv_query_result(emptydf), entities)
assert file_status['to_validate']
assert file_status['status_list'] == ['INVALID']
assert file_status['error_list'] == []
def test_unvalidatedinput_check_existing_file_status():
'''
Test the values returned by input that hasn't be validated
'''
entity = synapseclient.Entity(id='syn1234')
entity.properties.versionNumber = '1'
entities = [entity]
file_status = input_to_database.check_existing_file_status(
mock_csv_query_result(emptydf), mock_csv_query_result(emptydf),
entities)
assert file_status['to_validate']
assert file_status['status_list'] == []
assert file_status['error_list'] == []
def test_twoinvalid_check_existing_file_status():
'''
Test to make sure both invalid statues get passed back
'''
validation_statusdf = pd.DataFrame({
'id': ['syn1234', 'syn2345'],
'versionNumber': ['1', '1'],
'status': ['INVALID', 'INVALID'],
'md5': ['3333', '44444'],
'name': ['first.txt', 'second.txt']
})
error_trackerdf = pd.DataFrame({
'id': ['syn1234', 'syn2345'],
'versionNumber': ['1', '1'],
'errors': ['Invalid file format', 'Invalid formatting issues']
})
first_entity = synapseclient.Entity(name='first.txt',
id='syn1234',
md5='3333')
first_entity.properties.versionNumber = '1'
second_entity = synapseclient.Entity(name='second.txt',
id='syn2345',
md5='44444')
second_entity.properties.versionNumber = '1'
entities = [first_entity, second_entity]
file_status = input_to_database.check_existing_file_status(
mock_csv_query_result(validation_statusdf),
mock_csv_query_result(error_trackerdf), entities)
assert not file_status['to_validate']
assert file_status['status_list'] == ['INVALID', 'INVALID']
assert file_status['error_list'] == [
'Invalid file format', 'Invalid formatting issues'
]