#!/bin/env python27
import re, sys
from getwiki import GlycanData
w = GlycanData()
for g in w.iterglycanid():
print g
#!/bin/env python2
import re, sys
from getwiki import GlycanData
from collections import defaultdict
headers = """
accession Hex HexNAc dHex NeuAc NeuGc HexA HexN S P aldi Xxx X Count
""".split()
w = GlycanData()
print "\t".join(headers)
for acc in w.iterglycanid():
g = w.get(acc)
row = defaultdict(lambda: [0, False])
row['accession'] = (acc, False)
for ann in g.annotations(type="MonosaccharideCount", source="EdwardsLab"):
try:
value = [int(ann.get('value')), False]
except ValueError:
value = [int(ann.get('value')[:-1]), True]
prop = ann.get('property')
if prop.endswith('Count'):
prop = prop[:-5]
row[prop] = value
# print row
row['Count'] = row['Monosaccharide']
if 'Xxx' not in row:
row['Xxx'] = [0, False]
for k in row: