def getHistoryDataFromItemIRIs(self, protocolId, IRIGroup):
from girderformindlogger.models.item import Item as ItemModel
from girderformindlogger.utility import jsonld_expander
protocol = self.load(protocolId, force=True)
items = {}
activities = {}
itemReferences = {}
result = {
'items': items,
'activities': activities,
'itemReferences': itemReferences
}
if 'historyId' not in protocol.get('meta', {}):
return result
historyFolder = FolderModel().load(protocol['meta']['historyId'],
force=True)
if 'referenceId' not in historyFolder.get('meta', {}):
return result
referencesFolder = FolderModel().load(
historyFolder['meta']['referenceId'], force=True)
itemModel = ItemModel()
for IRI in IRIGroup:
reference = itemModel.findOne({
'folderId': referencesFolder['_id'],
'meta.identifier': IRI
})
if not reference:
continue
history = reference['meta']['history']
for version in IRIGroup[IRI]:
if version not in itemReferences:
itemReferences[version] = {}
inserted = False
for i in range(0, len(history)):
if self.compareVersions(version,
history[i]['version']) <= 0:
if not history[i].get('reference', None):
continue
if history[i]['reference'] not in items:
(modelType,
referenceId) = history[i]['reference'].split('/')
model = MODELS()[modelType]().findOne(
{'_id': ObjectId(referenceId)})
items[history[i]
['reference']] = jsonld_expander.loadCache(
model['cached'])
activityId = str(model['meta']['activityId'])
if activityId not in activities:
activities[
activityId] = jsonld_expander.loadCache(
FolderModel().load(
activityId, force=True)['cached'])
if history[i]['reference']:
itemReferences[version][IRI] = history[i][
'reference']
inserted = True
break
if not inserted:
itemReferences[version][
IRI] = None # this is same as latest version
return result
def validate(self, doc, allowRename=False):
"""
Validate the name and description of the folder, ensure that it is
associated with a valid parent and that it has a unique name.
:param doc: the folder document to validate.
:param allowRename: if True and a folder or item exists with the same
name, rename the folder so that it is unique.
:returns: `the validated folder document`
"""
from girderformindlogger.models.item import Item
doc['name'] = doc['name'].strip()
doc['lowerName'] = doc['name'].lower()
doc['description'] = doc['description'].strip()
if not doc['name']:
raise ValidationException('Folder name must not be empty.', 'name')
if not doc['parentCollection'] in ('folder', 'user', 'collection'):
# Internal error; this shouldn't happen
raise GirderException('Invalid folder parent type: %s.' %
doc['parentCollection'],
'girderformindlogger.models.folder.invalid-parent-type')
name = doc['name']
# If the folder already exists with the current name, don't check.
# Although we don't want duplicate names, they can occur when there are
# simultaneous uploads, and also because Mongo has no guaranteed
# multi-collection uniqueness constraints. If this occurs, and we are
# changing a non-name property, don't validate the name (since that may
# fail). If the name is being changed, validate that it is probably
# unique.
checkName = '_id' not in doc or not self.findOne({'_id': doc['_id'], 'name': name})
n = 0
itemModel = Item()
while checkName:
q = {
'parentId': doc['parentId'],
'name': name,
'parentCollection': doc['parentCollection']
}
if '_id' in doc:
q['_id'] = {'$ne': doc['_id']}
dupFolder = self.findOne(q, fields=['_id'])
if doc['parentCollection'] == 'folder':
q = {
'folderId': doc['parentId'],
'name': name
}
dupItem = itemModel.findOne(q, fields=['_id'])
else:
dupItem = None
if dupItem is None and dupFolder is None:
doc['name'] = name
break
if not allowRename:
if dupFolder:
raise ValidationException('A folder with that name '
'already exists here.', 'name')
raise ValidationException('An item with that name already '
'exists here.', 'name')
n += 1
name = '%s (%d)' % (doc['name'], n)
return doc
