def to_topology(self):
ssh_pubkeyf = os.path.expanduser(self.get("ssh-pubkey"))
ssh_pubkeyf = open(ssh_pubkeyf)
ssh_pubkey = ssh_pubkeyf.read().strip()
ssh_pubkeyf.close()
topology = Topology()
if self.get("deploy") == "dummy":
# No default deploy data
pass
elif self.get("deploy") == "ec2":
deploy_data = DeployData()
ec2_deploy_data = EC2DeployData()
ec2_deploy_data.set_property("ami", self.get("ec2-ami"))
ec2_deploy_data.set_property("instance_type", self.get("ec2-instance-type"))
deploy_data.set_property("ec2", ec2_deploy_data)
topology.set_property("default_deploy_data", deploy_data)
domains = self.get("domains").split()
for domain_name in domains:
domain = Domain()
domain.set_property("id", domain_name)
topology.add_to_array("domains", domain)
user = User()
user.set_property("id", getpass.getuser())
user.set_property("password_hash", "!")
user.set_property("certificate", "generated")
user.set_property("admin", True)
user.set_property("ssh_pkey", ssh_pubkey)
domain.add_user(user)
usersfile = self.get((domain_name, "users-file"))
if usersfile != None:
usersfile = open(usersfile, "r")
for line in usersfile:
fields = line.split()
type = fields[0]
username = fields[1]
if len(fields) >= 3:
user_ssh_pubkey = " ".join(fields[2:])
else:
user_ssh_pubkey = ssh_pubkey
user = User()
user.set_property("id", username)
user.set_property("password_hash", "!")
user.set_property("ssh_pkey", user_ssh_pubkey)
if type == "C":
user.set_property("certificate", "generated")
else:
user.set_property("certificate", "none")
domain.add_user(user)
usersfile.close()
else:
users = self.get((domain_name, "users"))
users_nocert = self.get((domain_name, "users-no-cert"))
if users.isdigit():
num_users = int(users)
usernames = [("%s-user%i" % (domain_name, i), True) for i in range(1,num_users + 1)]
else:
num_users = 0
usernames = [(u, True) for u in users.split() if u != getpass.getuser()]
if users_nocert.isdigit():
usernames += [("%s-user%i" % (domain_name, i), False) for i in range(num_users + 1,num_users + int(users_nocert) + 1)]
else:
usernames += [(u, False) for u in users_nocert.split() if u != getpass.getuser()]
for username, cert in usernames:
user = User()
user.set_property("id", username)
user.set_property("password_hash", "!")
user.set_property("ssh_pkey", ssh_pubkey)
if cert:
user.set_property("certificate", "generated")
else:
user.set_property("certificate", "none")
domain.add_user(user)
for user in domain.users.values():
gme = GridMapEntry()
gme.set_property("dn", "/O=Grid/OU=Globus Provision (generated)/CN=%s" % user.id)
gme.set_property("login", user.id)
domain.add_to_array("gridmap", gme)
if self.get((domain_name,"go-auth")) == "go":
gme = GridMapEntry()
gme.set_property("dn", "/C=US/O=Globus Consortium/OU=Globus Connect User/CN=%s" % user.id)
gme.set_property("login", user.id)
domain.add_to_array("gridmap", gme)
if self.get((domain_name,"nfs-nis")):
server_node = Node()
server_name = "%s-server" % domain_name
server_node.set_property("id", server_name)
server_node.add_to_array("run_list", "role[domain-nfsnis]")
if not self.get((domain_name,"login")):
# If there is no login node, the NFS/NIS server will
# effectively act as one.
server_node.add_to_array("run_list", "role[globus]")
if self.get((domain_name,"galaxy")):
# If there is a Galaxy server in the domain, the "common"
# recipe has to be installed on the NFS/NIS server
server_node.add_to_array("run_list", "recipe[galaxy::galaxy-globus-common]")
domain.add_node(server_node)
if self.get((domain_name,"login")):
login_node = Node()
login_node.set_property("id", "%s-login" % domain_name)
if self.get((domain_name,"nfs-nis")):
login_node.set_property("depends", "node:%s" % server_name)
login_node.add_to_array("run_list", "role[domain-nfsnis-client]")
else:
login_node.add_to_array("run_list", "recipe[provision::domain_users]")
login_node.add_to_array("run_list", "role[globus]")
domain.add_node(login_node)
if self.get((domain_name,"myproxy")):
myproxy_node = Node()
myproxy_node.set_property("id", "%s-myproxy" % domain_name)
if self.get((domain_name,"nfs-nis")):
myproxy_node.set_property("depends", "node:%s" % server_name)
myproxy_node.add_to_array("run_list", "role[domain-nfsnis-client]")
else:
myproxy_node.add_to_array("run_list", "recipe[provision::domain_users]")
myproxy_node.add_to_array("run_list", "role[domain-myproxy]")
domain.add_node(myproxy_node)
if self.get((domain_name,"gridftp")):
gridftp_node = Node()
gridftp_node.set_property("id", "%s-gridftp" % domain_name)
if self.get((domain_name,"nfs-nis")):
gridftp_node.set_property("depends", "node:%s" % server_name)
gridftp_node.add_to_array("run_list", "role[domain-nfsnis-client]")
else:
gridftp_node.add_to_array("run_list", "recipe[provision::domain_users]")
if self.get((domain_name,"go-endpoint")) != None:
gridftp_node.add_to_array("run_list", "recipe[globus::go_cert]")
gridftp_node.add_to_array("run_list", "role[domain-gridftp]")
domain.add_node(gridftp_node)
if self.get((domain_name,"galaxy")):
galaxy_node = Node()
galaxy_node.set_property("id", "%s-galaxy" % domain_name)
if self.get((domain_name,"nfs-nis")):
galaxy_node.set_property("depends", "node:%s" % server_name)
galaxy_node.add_to_array("run_list", "role[domain-nfsnis-client]")
else:
galaxy_node.add_to_array("run_list", "recipe[provision::domain_users]")
galaxy_node.add_to_array("run_list", "recipe[galaxy::galaxy-globus-common]")
if self.get((domain_name,"go-endpoint")) != None:
galaxy_node.add_to_array("run_list", "recipe[globus::go_cert]")
galaxy_node.add_to_array("run_list", "recipe[galaxy::galaxy-globus]")
domain.add_node(galaxy_node)
lrm = self.get((domain_name,"lrm"))
if lrm != "none":
gram = self.get((domain_name,"gram"))
if lrm == "condor":
if gram:
node_name = "%s-gram-condor" % domain_name
role = "role[domain-gram-condor]"
else:
node_name = "%s-condor" % domain_name
role = "role[domain-condor]"
workernode_role = "role[domain-clusternode-condor]"
lrm_node = Node()
lrm_node.set_property("id", node_name)
if self.get((domain_name,"nfs-nis")):
lrm_node.set_property("depends", "node:%s" % server_name)
lrm_node.add_to_array("run_list", "role[domain-nfsnis-client]")
else:
lrm_node.add_to_array("run_list", "recipe[provision::domain_users]")
lrm_node.add_to_array("run_list", role)
domain.add_node(lrm_node)
clusternode_host = 1
for i in range(self.get((domain_name,"cluster-nodes"))):
wn_name = "%s-condor-wn%i" % (domain_name, i+1)
wn_node = Node()
wn_node.set_property("id", wn_name)
wn_node.set_property("depends", "node:%s" % node_name)
if self.get((domain_name,"nfs-nis")):
wn_node.add_to_array("run_list", "role[domain-nfsnis-client]")
else:
wn_node.add_to_array("run_list", "recipe[provision::domain_users]")
wn_node.add_to_array("run_list", workernode_role)
domain.add_node(wn_node)
clusternode_host += 1
if self.get((domain_name,"go-endpoint")) != None:
goep = GOEndpoint()
gouser, goname = self.get((domain_name,"go-endpoint")).split("#")
goep.set_property("user", gouser)
goep.set_property("name", goname)
goep.set_property("gridftp", "node:%s-gridftp" % domain_name)
if self.get((domain_name,"go-auth")) == "myproxy":
goep.set_property("myproxy", "node:%s-myproxy" % domain_name)
else:
goep.set_property("myproxy", "myproxy.globusonline.org")
domain.add_to_array("go_endpoints", goep)
return topology
def to_topology(self):
ssh_pubkeyf = os.path.expanduser(self.get("ssh-pubkey"))
ssh_pubkeyf = open(ssh_pubkeyf)
ssh_pubkey = ssh_pubkeyf.read().strip()
ssh_pubkeyf.close()
topology = Topology()
if self.get("deploy") == "dummy":
# No default deploy data
pass
elif self.get("deploy") == "ec2":
deploy_data = DeployData()
ec2_deploy_data = EC2DeployData()
ami = self.get("ec2-ami")
if ami == "latest-32bit":
ami = AMI["us-east-1"]["32-bit"]
elif ami == "latest-64bit":
ami = AMI["us-east-1"]["64-bit"]
elif ami == "latest-hvm":
ami = AMI["us-east-1"]["hvm"]
ec2_deploy_data.set_property("ami", ami)
ec2_deploy_data.set_property("instance_type", self.get("ec2-instance-type"))
deploy_data.set_property("ec2", ec2_deploy_data)
topology.set_property("default_deploy_data", deploy_data)
domains = self.get("domains").split()
for domain_name in domains:
domain = Domain()
domain.set_property("id", domain_name)
topology.add_to_array("domains", domain)
glusterfs_servers = []
has_go_ep = self.get((domain_name,"go-endpoint")) != None
user = User()
user.set_property("id", getpass.getuser())
user.set_property("password_hash", "!")
user.set_property("certificate", "generated")
user.set_property("admin", True)
user.set_property("ssh_pkey", ssh_pubkey)
domain.add_user(user)
usersfile = self.get((domain_name, "users-file"))
if usersfile != None:
usersfile = open(usersfile, "r")
for line in usersfile:
fields = line.split()
type = fields[0]
username = fields[1]
if len(fields) >= 3:
user_ssh_pubkey = " ".join(fields[2:])
else:
user_ssh_pubkey = ssh_pubkey
user = User()
user.set_property("id", username)
user.set_property("password_hash", "!")
user.set_property("ssh_pkey", user_ssh_pubkey)
if type == "C":
user.set_property("certificate", "generated")
else:
user.set_property("certificate", "none")
domain.add_user(user)
usersfile.close()
else:
users = self.get((domain_name, "users"))
users_nocert = self.get((domain_name, "users-no-cert"))
if users.isdigit():
num_users = int(users)
usernames = [("%s-user%i" % (domain_name, i), True) for i in range(1,num_users + 1)]
else:
num_users = 0
usernames = [(u, True) for u in users.split() if u != getpass.getuser()]
if users_nocert.isdigit():
usernames += [("%s-user%i" % (domain_name, i), False) for i in range(num_users + 1,num_users + int(users_nocert) + 1)]
else:
usernames += [(u, False) for u in users_nocert.split() if u != getpass.getuser()]
for username, cert in usernames:
userpass = username.split(":")
login = userpass[0]
if len(userpass) == 1:
password = "******"
elif len(userpass) > 1:
password = gen_sha512(userpass[1])
user = User()
user.set_property("id", login)
user.set_property("password_hash", password)
user.set_property("ssh_pkey", ssh_pubkey)
if cert:
user.set_property("certificate", "generated")
else:
user.set_property("certificate", "none")
domain.add_user(user)
if self.get((domain_name, "gridmap")):
for user in domain.users.values():
gme = GridMapEntry()
gme.set_property("dn", "/O=Grid/OU=Globus Provision (generated)/CN=%s" % user.id)
gme.set_property("login", user.id)
domain.add_to_array("gridmap", gme)
nis_server = None
fs = FileSystem()
domain.set_property("filesystem", fs)
fs_type = self.get((domain_name,"filesystem"))
fs_headnode = None
if self.get((domain_name,"nis")) or fs_type == "nfs":
# We need a server node
server_node = Node()
server_name = "%s-server" % domain_name
server_node.set_property("id", server_name)
server_node.add_to_array("run_list", "recipe[provision::gp_node]")
server_node.add_to_array("run_list", "recipe[provision::nis_server]")
if not self.get((domain_name,"login")):
# If there is no login node, the NFS/NIS server will
# effectively act as one.
server_node.add_to_array("run_list", "role[globus]")
fs_headnode = server_node
if self.get((domain_name,"nis")):
nis_server = server_node
domain.add_node(server_node)
if fs_type == "local-only":
fs.set_property("dir_homes", "/home")
fs.set_property("dir_software", "/usr/local")
fs.set_property("dir_scratch", "/var/tmp")
if fs_type == "nfs":
fs_headnode.add_to_array("run_list", "recipe[provision::nfs_server]")
fs.set_property("dir_homes", "/nfs/home")
fs.set_property("dir_software", "/nfs/software")
fs.set_property("dir_scratch", "/nfs/scratch")
mounts = [ ("/nfs/home", "0755", "/nfs/home"),
("/nfs/software/", "0755", "/nfs/software"),
("/ephemeral/0/scratch", "1777", "/nfs/scratch")]
for path, mode, mountpoint in mounts:
mount = NFSMount()
mount.set_property("server", "node:%s" % fs_headnode.id)
mount.set_property("owner", "root")
mount.set_property("mode", mode)
mount.set_property("path", path)
mount.set_property("mountpoint", mountpoint)
fs.add_to_array("nfs_mounts", mount)
if fs_type == "glusterfs":
glusterfs_servers_num = self.get((domain_name, "glusterfs-servers"))
glusterfs_type = self.get((domain_name, "glusterfs-type"))
glusterfs_setsize = self.get((domain_name, "glusterfs-setsize"))
# Kludge until we add a general Filesystem object to the topology
domain.set_property("glusterfs_type", glusterfs_type)
domain.set_property("glusterfs_setsize", glusterfs_setsize)
glusterfs_servers = []
# The first server is arbitrarily the one where we will set up GlusterFS
name = "glusterfsd-1"
head_node = self.__create_node(domain, name, nis_server)
head_node.add_to_array("run_list", "recipe[glusterfs::glusterfs-server-head]")
glusterfs_servers.append("%s-%s" % (domain_name, name))
fs_headnode = head_node
for i in range(1,glusterfs_servers_num):
name = "glusterfsd-%i" % (i+1)
node = self.__create_node(domain, name, nis_server)
node.add_to_array("run_list", "recipe[glusterfs::glusterfs-server]")
node_name = "%s-%s" % (domain_name, name)
glusterfs_servers.append(node_name)
head_node.add_to_array("depends", "node:%s" % node_name)
# TODO: Add GlusterFSVols to FileSystem
if self.get((domain_name,"nis")):
nis_server.add_to_array("run_list", "recipe[provision::domain_users]")
if fs_headnode != None:
fs_headnode.add_to_array("run_list", "recipe[provision::software_path-common]")
if self.get((domain_name,"R")):
# If R is installed in the domain, we need to setup the global
# Rlibs directory
fs_headnode.add_to_array("run_list", "recipe[R::Rlibs-dir-common]")
if self.get((domain_name,"galaxy")):
# If there is a Galaxy server in the domain, the "common"
# recipe has to be installed on the NFS/NIS server
fs_headnode.add_to_array("run_list", "recipe[galaxy::galaxy-globus-common]")
fs_headnode.add_to_array("run_list", "recipe[galaxy::blast-nfsserver]")
if self.get((domain_name,"hadoop")):
# If there is a Hadoop cluster in the domain, the "common"
# recipe has to be installed on the NFS/NIS server
fs_headnode.add_to_array("run_list", "recipe[hadoop::hadoop-common]")
if self.get((domain_name,"R")):
# If R is installed on the cluster, we'll want RHadoop
fs_headnode.add_to_array("run_list", "recipe[hadoop::rhadoop-common]")
for i in range(self.get((domain_name,"barebones-nodes"))):
node = self.__create_node(domain, "blank-%i" % (i+1), nis_server)
node.add_to_array("run_list", "role[globus]")
if self.get((domain_name,"login")):
node = self.__create_node(domain, "login", nis_server)
node.add_to_array("run_list", "role[globus]")
if self.get((domain_name,"R")):
node.add_to_array("run_list", "recipe[R]")
node.add_to_array("run_list", "recipe[R::Rlibs-dir]")
if self.get((domain_name,"simpleca")):
node = self.__create_node(domain, "simpleca", nis_server)
node.add_to_array("run_list", "role[globus]")
node.add_to_array("run_list", "recipe[provision::simpleca]")
gridftp_node = None
myproxy_node = None
if self.get((domain_name,"myproxy")) and self.get((domain_name,"gridftp")) and has_go_ep and self.get((domain_name,"go-gc")):
node = self.__create_node(domain, "myproxy-gridftp", nis_server)
node.add_to_array("run_list", "role[domain-myproxy-gc]")
node.add_to_array("run_list", "role[domain-gridftp-gc]")
gridftp_node = myproxy_node = node
else:
if self.get((domain_name,"myproxy")):
myproxy_node = self.__create_node(domain, "myproxy", nis_server)
if has_go_ep:
if self.get((domain_name,"go-gc")):
myproxy_node.add_to_array("run_list", "role[domain-myproxy-gc]")
else:
myproxy_node.add_to_array("run_list", "recipe[globus::go_cert]")
myproxy_node.add_to_array("run_list", "role[domain-myproxy-default]")
else:
myproxy_node.add_to_array("run_list", "role[domain-myproxy-default]")
if self.get((domain_name,"gridftp")):
gridftp_node = self.__create_node(domain, "gridftp", nis_server)
if has_go_ep:
if self.get((domain_name,"go-gc")):
gridftp_node.add_to_array("run_list", "role[domain-gridftp-gc]")
else:
gridftp_node.add_to_array("run_list", "recipe[globus::go_cert]")
gridftp_node.add_to_array("run_list", "role[domain-gridftp-default]")
else:
gridftp_node.add_to_array("run_list", "role[domain-gridftp-default]")
if self.get((domain_name,"galaxy")) and not self.get((domain_name,"condor")):
node = self.__create_node(domain, "galaxy", nis_server)
if fs_type == "local-only":
node.add_to_array("run_list", "recipe[galaxy::galaxy-globus-common]")
if self.get((domain_name,"go-endpoint")) != None:
node.add_to_array("run_list", "recipe[globus::go_cert]")
node.add_to_array("run_list", "recipe[galaxy::galaxy-globus]")
if self.get((domain_name,"condor")):
galaxy = self.get((domain_name,"galaxy"))
if self.get((domain_name,"gram")):
head_name = "gram-condor"
head_role = "role[domain-gram-condor]"
else:
if galaxy:
head_name = "galaxy-condor"
else:
head_name = "condor"
head_role = "role[domain-condor]"
worker_name = "condor-wn"
worker_role = "role[domain-clusternode-condor]"
num_workers = self.get((domain.id,"condor-nodes"))
head_node, workers = self.__gen_cluster(domain, nis_server, None, head_name, head_role, worker_name, worker_role, num_workers)
if self.get((domain_name,"galaxy")):
if fs_type == "local-only":
head_node.add_to_array("run_list", "recipe[galaxy::galaxy-globus-common]")
if self.get((domain_name,"go-endpoint")) != None:
head_node.add_to_array("run_list", "recipe[globus::go_cert]")
head_node.add_to_array("run_list", "recipe[galaxy::galaxy-globus]")
if self.get((domain_name,"hadoop")):
head_name = "hadoop-master"
head_role = "role[domain-hadoop-master]"
worker_name = "hadoop-slave"
worker_role = "role[domain-hadoop-slave]"
num_workers = self.get((domain.id,"hadoop-nodes"))
if fs_type == "local-only":
common_recipe = "recipe[hadoop::hadoop-common]"
else:
common_recipe = None
head_node, workers = self.__gen_cluster(domain, nis_server, common_recipe, head_name, head_role, worker_name, worker_role, num_workers, head_depends_on_workers=True)
if self.get((domain_name,"R")):
# If R is installed in the domain, we need to make sure the worker
# nodes have R, and that they are aware of the global Rlibs directory
for n in [head_node] + workers:
n.add_to_array("run_list", "recipe[R]")
n.add_to_array("run_list", "recipe[R::Rlibs-dir]")
if has_go_ep:
goep = GOEndpoint()
gouser, goname = self.get((domain_name,"go-endpoint")).split("#")
goep.set_property("user", gouser)
goep.set_property("name", goname)
goep.set_property("public", False)
goep.set_property("gridftp", "node:%s" % gridftp_node.id)
if self.get((domain_name,"go-auth")) == "myproxy":
goep.set_property("myproxy", "node:%s" % myproxy_node.id)
else:
goep.set_property("myproxy", "myproxy.globusonline.org")
goep.set_property("globus_connect_cert", self.get((domain_name,"go-gc")))
domain.add_to_array("go_endpoints", goep)
for user in domain.users.values():
if self.get((domain_name,"go-auth")) == "go":
gme = GridMapEntry()
gme.set_property("dn", "/C=US/O=Globus Consortium/OU=Globus Connect User/CN=%s" % user.id)
gme.set_property("login", user.id)
domain.add_to_array("gridmap", gme)
return topology