#!/usr/bin/env python
# stdlib imports
import sys
import os.path
import argparse
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
# local imports
log = LazyLoader("log", globals(), "gmprocess.utils.logging")
argmod = LazyLoader("argmod", globals(), "gmprocess.utils.args")
streamcollection = LazyLoader(
"streamcollection", globals(), "gmprocess.core.streamcollection"
)
readmod = LazyLoader("readmod", globals(), "gmprocess.io.read")
read_directory = LazyLoader("read_directory", globals(), "gmprocess.io.read_directory")
class CustomFormatter(
argparse.ArgumentDefaultsHelpFormatter, argparse.RawDescriptionHelpFormatter
):
pass
FORMATS = [
"AH",
"GSE2",
"MSEED",
"PICKLE",
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import logging
import shutil
from glob import glob
from gmprocess.subcommands.lazy_loader import LazyLoader
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
class CleanModule(base.SubcommandModule):
"""Clean (i.e., remove) project data."""
command_name = "clean"
arguments = [
{
"short_flag": "-a",
"long_flag": "--all",
"help": "Remove all project files except raw data.",
"default": False,
"action": "store_true",
},
{
"long_flag": "--raw",
"help": "Remove all raw directories.",
"default": False,
"action": "store_true",
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
np = LazyLoader("np", globals(), "numpy")
spint = LazyLoader("spint", globals(), "scipy.interpolate")
gmt = LazyLoader("gmt", globals(), "mapio.gmt")
ob = LazyLoader("ob", globals(), "obspy.geodetics.base")
oqgeo = LazyLoader("oqgeo", globals(), "openquake.hazardlib.geo.geodetic")
rupt = LazyLoader("rupt", globals(), "impactutils.rupture")
ps2ff = LazyLoader("ps2ff", globals(), "ps2ff")
arg_dicts = LazyLoader("arg_dicts", globals(),
"gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
utils = LazyLoader("utils", globals(), "gmprocess.utils")
rupt_utils = LazyLoader("rupt_utils", globals(),
"gmprocess.utils.rupture_utils")
ws = LazyLoader("ws", globals(), "gmprocess.io.asdf.stream_workspace")
station_summary = LazyLoader("station_summary", globals(),
"gmprocess.metrics.station_summary")
confmod = LazyLoader("confmod", globals(), "gmprocess.utils.config")
M_PER_KM = 1000
class ComputeStationMetricsModule(base.SubcommandModule):
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
arg_dicts = LazyLoader("arg_dicts", globals(), "gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
ws = LazyLoader("ws", globals(), "gmprocess.io.asdf.stream_workspace")
const = LazyLoader("const", globals(), "gmprocess.utils.constants")
sm_utils = LazyLoader("sm_utils", globals(), "gmprocess.utils.export_shakemap_utils")
confmod = LazyLoader("confmod", globals(), "gmprocess.utils.config")
class ExportShakeMapModule(base.SubcommandModule):
"""Export files for ShakeMap input."""
command_name = "export_shakemap"
aliases = ("shakemap",)
arguments = [
arg_dicts.ARG_DICTS["eventid"],
arg_dicts.ARG_DICTS["textfile"],
arg_dicts.ARG_DICTS["label"],
{
"short_flag": "-x",
"long_flag": "--expand-imts",
"help": (
"Use expanded IMTs. Currently this only means all the "
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
distributed = LazyLoader("distributed", globals(), "dask.distributed")
arg_dicts = LazyLoader("arg_dicts", globals(),
"gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
const = LazyLoader("const", globals(), "gmprocess.utils.constants")
ws = LazyLoader("ws", globals(), "gmprocess.io.asdf.stream_workspace")
processing = LazyLoader("processing", globals(),
"gmprocess.waveform_processing.processing")
confmod = LazyLoader("confmod", globals(), "gmprocess.utils.config")
class ProcessWaveformsModule(base.SubcommandModule):
"""Process waveform data."""
command_name = "process_waveforms"
aliases = ("process", )
# Note: do not use the ARG_DICT entry for label because the explanation is
# different here.
arguments = [
arg_dicts.ARG_DICTS["eventid"],
arg_dicts.ARG_DICTS["textfile"],
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
distributed = LazyLoader("distributed", globals(), "dask.distributed")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
arg_dicts = LazyLoader("arg_dicts", globals(), "gmprocess.subcommands.arg_dicts")
ws = LazyLoader("ws", globals(), "gmprocess.io.asdf.stream_workspace")
report = LazyLoader("report", globals(), "gmprocess.io.report")
plot = LazyLoader("plot", globals(), "gmprocess.utils.plot")
const = LazyLoader("const", globals(), "gmprocess.utils.constants")
class GenerateReportModule(base.SubcommandModule):
"""Generate summary report (latex required)."""
command_name = "generate_report"
aliases = ("report",)
arguments = [
arg_dicts.ARG_DICTS["eventid"],
arg_dicts.ARG_DICTS["textfile"],
arg_dicts.ARG_DICTS["label"],
arg_dicts.ARG_DICTS["num_processes"],
]
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import sys
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
configobj = LazyLoader("configobj", globals(), "configobj")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
const = LazyLoader("const", globals(), "gmprocess.utils.constants")
projects = LazyLoader("projects", globals(), "gmprocess.subcommands.projects")
class InitModule(base.SubcommandModule):
"""
Initialize the current directory as a gmprocess project directory.
"""
command_name = "init"
arguments = []
def main(self, gmrecords):
"""
Initialize the current directory as a gmprocess project directory.
Args:
gmrecords:
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import sys
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
distributed = LazyLoader("distributed", globals(), "dask.distributed")
arg_dicts = LazyLoader("arg_dicts", globals(), "gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
constants = LazyLoader("constants", globals(), "gmprocess.utils.constants")
assemble_utils = LazyLoader(
"assemble_utils", globals(), "gmprocess.utils.assemble_utils"
)
class AssembleModule(base.SubcommandModule):
"""Assemble raw data and organize it into an ASDF file."""
command_name = "assemble"
arguments = [
arg_dicts.ARG_DICTS["eventid"],
arg_dicts.ARG_DICTS["textfile"],
arg_dicts.ARG_DICTS["overwrite"],
arg_dicts.ARG_DICTS["num_processes"],
]
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import sys
from abc import ABC, abstractmethod
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
base_utils = LazyLoader("base_utils", globals(), "gmprocess.utils.base_utils")
confmod = LazyLoader("confmod", globals(), "gmprocess.utils.config")
class SubcommandModule(ABC):
"""gmprocess base module."""
@property
@abstractmethod
def command_name(self):
"""
Name of subcommand: string, all lowercase.
"""
raise NotImplementedError
"""Tuple class variable of subcommand aliases.
"""
aliases = ()
def __init__(self):
"""Dictionary instance variable to track files created by module."""
self.files_created = {}
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
arg_dicts = LazyLoader("arg_dicts", globals(), "gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
distributed = LazyLoader("distributed", globals(), "dask.distributed")
ws = LazyLoader("ws", globals(), "gmprocess.io.asdf.stream_workspace")
station_summary = LazyLoader(
"station_summary", globals(), "gmprocess.metrics.station_summary"
)
const = LazyLoader("const", globals(), "gmprocess.utils.constants")
class ComputeWaveformMetricsModule(base.SubcommandModule):
"""Compute waveform metrics."""
command_name = "compute_waveform_metrics"
aliases = ("wm",)
arguments = [
arg_dicts.ARG_DICTS["eventid"],
arg_dicts.ARG_DICTS["textfile"],
arg_dicts.ARG_DICTS["label"],
arg_dicts.ARG_DICTS["overwrite"],
arg_dicts.ARG_DICTS["num_processes"],
]
#!/usr/bin/env python
# stdlib imports
import os.path
import argparse
from collections import OrderedDict
import sys
import warnings
import textwrap
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
# third party imports
pd = LazyLoader("pd", globals(), "pandas")
# local imports
readmod = LazyLoader("readmod", globals(), "gmprocess.io.read")
argmod = LazyLoader("argmod", globals(), "gmprocess.utils.args")
stationtrace = LazyLoader("stationtrace", globals(),
"gmprocess.core.stationtrace")
confmod = LazyLoader("confmod", globals(), "gmprocess.utils.config")
COLUMNS = [
"Filename",
"Format",
"Process Level",
"Start Time",
"End Time",
"Duration (s)",
"Network",
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import sys
import platform
import re
import logging
import shutil
from gmprocess.subcommands.lazy_loader import LazyLoader
distributed = LazyLoader("distributed", globals(), "dask.distributed")
ryaml = LazyLoader("yaml", globals(), "ruamel.yaml")
pkg_resources = LazyLoader("pkg_resources", globals(), "pkg_resources")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
constants = LazyLoader("constants", globals(), "gmprocess.utils.constants")
prompt = LazyLoader("prompt", globals(), "gmprocess.utils.prompt")
# Regular expression for checking valid email
re_email = r"^[a-z0-9]+[\._]?[a-z0-9]+[@]\w+[.]\w{2,3}$"
class ProjectsModule(base.SubcommandModule):
"""
Manage gmrecords projects.
"""
command_name = "projects"
aliases = ("proj", )
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import shutil
from distutils.dir_util import copy_tree
import logging
import zipfile
import tarfile
from gmprocess.subcommands.lazy_loader import LazyLoader
arg_dicts = LazyLoader("arg_dicts", globals(), "gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
class ImportModule(base.SubcommandModule):
"""Import data for an event into the project data directory."""
command_name = "import"
arguments = [
arg_dicts.ARG_DICTS["eventid"],
{
"short_flag": "-p",
"long_flag": "--path",
"help": ("Path to file or directory containing data to import."),
"type": str,
"default": None,
},
]
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import sys
import copy
import importlib
import pkgutil
import inspect
import argparse
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
configobj = LazyLoader("configobj", globals(), "configobj")
setuptools_scm = LazyLoader("setuptools_scm", globals(), "setuptools_scm")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
config = LazyLoader("config", globals(), "gmprocess.utils.config")
const = LazyLoader("const", globals(), "gmprocess.utils.constants")
log_utils = LazyLoader("log_utils", globals(), "gmprocess.utils.logging")
projmod = LazyLoader("projmod", globals(), "gmprocess.subcommands.projects")
init = LazyLoader("init", globals(), "gmprocess.subcommands.init")
VERSION = setuptools_scm.get_version(root=os.path.join(os.pardir, os.pardir),
relative_to=__file__)
class GMrecordsApp(object):
"""Main driver app for gmrpocess command-line interface.
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
arg_dicts = LazyLoader("arg_dicts", globals(),
"gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
download = LazyLoader("download", globals(), "gmprocess.subcommands.download")
import_data = LazyLoader("import_data", globals(),
"gmprocess.subcommands.import_data")
assemble = LazyLoader("assemble", globals(), "gmprocess.subcommands.assemble")
process_waveforms = LazyLoader("process_waveforms", globals(),
"gmprocess.subcommands.process_waveforms")
compute_station_metrics = LazyLoader(
"compute_station_metrics",
globals(),
"gmprocess.subcommands.compute_station_metrics",
)
compute_waveform_metrics = LazyLoader(
"compute_waveform_metrics",
globals(),
"gmprocess.subcommands.compute_waveform_metrics",
)
export_metric_tables = LazyLoader(
"export_metric_tables", globals(),
"gmprocess.subcommands.export_metric_tables")
export_shakemap = LazyLoader("export_shakemap", globals(),
"gmprocess.subcommands.export_shakemap")
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
arg_dicts = LazyLoader("arg_dicts", globals(),
"gmprocess.subcommands.arg_dicts")
base = LazyLoader("base", globals(), "gmprocess.subcommands.base")
ws = LazyLoader("ws", globals(), "gmprocess.io.asdf.stream_workspace")
const = LazyLoader("const", globals(), "gmprocess.utils.constants")
tables = LazyLoader("tables", globals(), "gmprocess.utils.tables")
class ExportMetricTablesModule(base.SubcommandModule):
"""Export metric tables."""
command_name = "export_metric_tables"
aliases = ("mtables", )
arguments = [
arg_dicts.ARG_DICTS["eventid"],
arg_dicts.ARG_DICTS["textfile"],
arg_dicts.ARG_DICTS["label"],
arg_dicts.ARG_DICTS["output_format"],
arg_dicts.ARG_DICTS["overwrite"],
]
def main(self, gmrecords):
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import sys
from abc import ABC, abstractmethod
import logging
from gmprocess.subcommands.lazy_loader import LazyLoader
base_utils = LazyLoader("base_utils", globals(), "gmprocess.utils.base_utils")
class SubcommandModule(ABC):
"""gmprocess base module."""
@property
@abstractmethod
def command_name(self):
"""
Name of subcommand: string, all lowercase.
"""
raise NotImplementedError
"""Tuple class variable of subcommand aliases.
"""
aliases = ()
def __init__(self):
"""Dictionary instance variable to track files created by module."""
self.files_created = {}
