def parse_(gnomic_string, *args, **kwargs):
parser = GnomicParser()
semantics = DefaultSemantics(*args, **kwargs)
return parser.parse(gnomic_string,
whitespace='',
semantics=semantics,
rule_name='FEATURE')
def _parse_gnomic_string(cls, gnomic_string, *args, **kwargs):
parser = GnomicParser()
semantics = DefaultSemantics(*args, **kwargs)
return parser.parse(gnomic_string,
whitespace='',
semantics=semantics,
rule_name='start')
def _parse_gnomic_string(cls, gnomic_string, *args, **kwargs):
parser = GnomicParser()
semantics = DefaultSemantics(*args, **kwargs)
return parser.parse(gnomic_string,
whitespace='',
semantics=semantics,
rule_name='start')
def parse_(gnomic_string, *args, **kwargs):
parser = GnomicParser()
semantics = DefaultSemantics(*args, **kwargs)
return parser.parse(gnomic_string,
whitespace='',
semantics=semantics,
rule_name='FEATURE')
def parse(cls, gnomic_change_string):
from gnomic.grammar import GnomicParser
from gnomic.semantics import DefaultSemantics
parser = GnomicParser()
semantics = DefaultSemantics()
return parser.parse(gnomic_change_string,
whitespace='',
semantics=semantics,
rule_name='CHANGE')
def parse(cls, gnomic_feature_string):
from gnomic.grammar import GnomicParser
from gnomic.semantics import DefaultSemantics
if not isinstance(gnomic_feature_string, six.string_types):
raise ValueError('"gnomic_feature_string" must a string, got {}'.format(repr(gnomic_feature_string)))
parser = GnomicParser()
semantics = DefaultSemantics()
return parser.parse(gnomic_feature_string,
whitespace='',
semantics=semantics,
rule_name='FEATURE')
def parse(cls, string, *args, **kwargs):
"""
::
>>> Feature.parse('MYO1#SGD:S000001065')
Feature(name='MYO1', accession=Accession(database='SGD', identifier='S000001065'}))
:param string:
:param args:
:param kwargs:
:return:
"""
from gnomic.grammar import GnomicParser
from gnomic.semantics import DefaultSemantics
parser = GnomicParser()
semantics = DefaultSemantics(*args, **kwargs)
return parser.parse(string,
whitespace='',
semantics=semantics,
rule_name='FEATURE')