def getAnalysisDict():
analyses = {}
for category in ANALYSIS_SPECS.keys():
analyses[category] = dict(
zip(ANALYSIS_SPECS[category],
[AnalysisDefHandler(q) for q in ANALYSIS_SPECS[category]]))
return analyses
def getOptionsBox1():
'''Returns a list of options to be displayed in the first options box
Alternatively, the following have special meaning:
'__genome__'
'__track__'
('__history__','bed','wig','...')
'''
return sorted(ANALYSIS_SPECS.keys())
def getOptionsBox1():
'''Returns a list of options to be displayed in the first options box
Alternatively, the following have special meaning:
'__genome__'
'__track__'
('__history__','bed','wig','...')
'''
return sorted(ANALYSIS_SPECS.keys())
def getAnalysisDict(cls):
if cls._analyses is None:
pickleFilePath = cls._getAnalysisPickleFilePath()
with closing(SafePickleFile(pickleFilePath)) as pickleFile:
cls._analyses = pickleFile.object
if cls._analyses is None:
cls._analyses = OrderedDict()
for category in ANALYSIS_SPECS.keys():
cls._analyses[
category] = AnalysisManager._filterAndParseAnalyses(
ANALYSIS_SPECS[category])
pickleFile.object = cls._analyses
return cls._analyses
def getAllCategoryNames():
return ANALYSIS_SPECS.keys()