def bipartite_view_genbank(request):
context = RequestContext(request)
context.update(csrf(request))
if request.method == 'POST':
request_data = request.POST
elif request.method == 'GET':
request_data = request.GET
else:
request_data = None
if request_data:
form = BipartiteForm3(request_data)
if form.is_valid():
seq = assemble_parts(form.cleaned_data, ['part_1', 'part_2'])
response = HttpResponse(seq.format('genbank'),
content_type='text/plain')
filename = seq.name + '.gb'
response['Content-Disposition'] = 'attachment; '
response['Content-Disposition'] += 'filename="{0}"'.format(filename)
return response
return HttpResponseBadRequest()
def bipartite_view_add(request):
context = RequestContext(request)
context.update(csrf(request))
request_data = request.POST
if not request_data:
return render_to_response('goldenbraid_info.html',
{'info': "Not enougth data to add the feature"},
context_instance=RequestContext(request))
name = request_data['name']
vector_name = request_data['Vector']
used_parts = {'Vector': vector_name,
'part_1': request_data['part_1'],
'part_2': request_data['part_2']}
seq = assemble_parts(used_parts, ['part_1', 'part_2'])
props = {'Description': [request_data['description']],
'Reference': [request_data['reference']]}
temp_fhand = NamedTemporaryFile(prefix='{0}.'.format(seq.id), suffix='.gb')
temp_fhand.write(seq.format('gb'))
temp_fhand.flush()
temp_fhand.seek(0)
try:
feature = add_feature(name=name, type_name=MODULE_TYPE_NAME,
vector=vector_name, genbank=temp_fhand, props=props,
owner=request.user, is_public=False)
except IntegrityError as error:
print error
if 'feature already in db' in str(error):
# TODO choose a template
return render_to_response('feature_exists.html',
{},
context_instance=RequestContext(request))
else:
return HttpResponseServerError()
except Exception as error:
print error
return HttpResponseServerError(error)
# if everithing os fine we show the just added feature
return redirect(feature.url)