def test_matches(self, tmpdir):
filename = "aardvark-4-reporting-for-duty.txt"
tmpdir.mkdir("tmp").join(filename).write("###")
f = File(join(str(tmpdir), filename))
e = Entity('avaricious', 'aardvark-(\d+)')
result = e.match_file(f)
assert result == '4'
def parse_entities(self, filelike):
if not isinstance(filelike, File):
filelike = File(filelike)
for ent in self.entities.values():
ent.matches(filelike)
return filelike.entities
def test_init(self, tmpdir):
fn = tmpdir.mkdir("tmp").join('tmp.txt')
fn.write('###')
f = File(str(fn))
assert os.path.exists(f.path)
assert f.filename is not None
assert os.path.isdir(f.dirname)
assert f.entities == {}
def test_matches(self, tmpdir):
filename = "aardvark-4-reporting-for-duty.txt"
tmpdir.mkdir("tmp").join(filename).write("###")
f = File(os.path.join(str(tmpdir), filename))
e = Entity('avaricious', 'aardvark-(\d+)')
e.matches(f)
assert 'avaricious' in f.entities
assert f.entities['avaricious'] == '4'
def file(tmpdir):
testfile = 'sub-03_ses-2_task-rest_acq-fullbrain_run-2_bold.nii.gz'
fn = tmpdir.mkdir("tmp").join(testfile)
fn.write('###')
return File(join(str(fn)))
def _make_file_object(self, root, f):
filepath = str(psp.join(root, f))
with self._hdfs_client.read(filepath):
return File(filepath)
