def test_return_conf_cor_mat():
"""compute weighted correlation matrices"""
# TODO find a real assert test...
resid_mat = regress_parameters(ts_mat, ts_covar)
filt_mat = filter_data(resid_mat)
norm_mat = normalize_data(filt_mat)
weight_vect = np.ones(time_length)
res = return_conf_cor_mat(norm_mat, weight_vect)
print(res)
def test_spearmanr_by_hand():
"""test corres matrix based on coords"""
# TODO find a real assert test...
"""compute weighted correlation matrices"""
# TODO find a real assert test...
resid_mat = regress_parameters(ts_mat, ts_covar)
filt_mat = filter_data(resid_mat)
norm_mat = normalize_data(filt_mat)
rho_mat, pval_mat = spearmanr_by_hand(norm_mat)
print(rho_mat, pval_mat)
def test_normalize_data():
"""test normalize time series"""
norm_mat = normalize_data(ts_mat)
assert np.all(norm_mat.shape == ts_mat.shape)