def test_heatmap_inputs(self):
"""
test parameter checks
"""
X = np.random.rand(10, 10)
with self.assertRaises(TypeError):
heatmap(X="input")
# transform
with self.assertRaises(ValueError):
transform = "bad transform"
heatmap(X, transform=transform)
# cmap
with self.assertRaises(TypeError):
cmap = 123
heatmap(X, cmap=cmap)
# center
with self.assertRaises(TypeError):
center = "center"
heatmap(X, center=center)
# cbar
with self.assertRaises(TypeError):
cbar = 1
heatmap(X, cbar=cbar)
def test_heatmap_output():
"""
simple function to see if plot is made without errors
"""
X = er_np(10, 0.5)
xticklabels = ["Dimension {}".format(i) for i in range(10)]
yticklabels = ["Dimension {}".format(i) for i in range(10)]
fig = heatmap(X, transform="log", xticklabels=xticklabels, yticklabels=yticklabels)
fig = heatmap(X, transform="zero-boost")
fig = heatmap(X, transform="simple-all")
fig = heatmap(X, transform="simple-nonzero")
fig = heatmap(X, transform="binarize")
fig = heatmap(X, cmap="gist_rainbow")
def test_common_inputs(self):
X = er_np(100, 0.5)
x = np.random.rand(100, 1)
y = np.random.rand(100, 1)
grid_labels = ["Test1"]
# test figsize
figsize = "bad figsize"
with self.assertRaises(TypeError):
heatmap(X, figsize=figsize)
with self.assertRaises(beartype.roar.BeartypeCallHintParamViolation):
with self.assertRaises(TypeError):
networkplot(adjacency=X, x=x, y=y, figsize=figsize)
# test height
height = "1"
with self.assertRaises(TypeError):
gridplot([X], grid_labels, height=height)
with self.assertRaises(TypeError):
pairplot(X, height=height)
# test title
title = 1
with self.assertRaises(TypeError):
heatmap(X, title=title)
with self.assertRaises(TypeError):
gridplot([X], grid_labels, title=title)
with self.assertRaises(TypeError):
pairplot(X, title=title)
with self.assertRaises(beartype.roar.BeartypeCallHintParamViolation):
with self.assertRaises(TypeError):
networkplot(adjacency=X, x=x, y=y, title=title)
# test context
context = 123
with self.assertRaises(TypeError):
heatmap(X, context=context)
with self.assertRaises(TypeError):
gridplot([X], grid_labels, context=context)
with self.assertRaises(TypeError):
pairplot(X, context=context)
with self.assertRaises(beartype.roar.BeartypeCallHintParamViolation):
with self.assertRaises(TypeError):
networkplot(adjacency=X, x=x, y=y, context=context)
context = "journal"
with self.assertRaises(ValueError):
heatmap(X, context=context)
with self.assertRaises(ValueError):
gridplot([X], grid_labels, context=context)
with self.assertRaises(ValueError):
pairplot(X, context=context)
with self.assertRaises(ValueError):
networkplot(adjacency=X, x=x, y=y, context=context)
# test font scales
font_scales = ["1", []]
for font_scale in font_scales:
with self.assertRaises(TypeError):
heatmap(X, font_scale=font_scale)
with self.assertRaises(TypeError):
gridplot([X], grid_labels, font_scale=font_scale)
with self.assertRaises(TypeError):
pairplot(X, font_scale=font_scale)
with self.assertRaises(
beartype.roar.BeartypeCallHintParamViolation):
with self.assertRaises(TypeError):
networkplot(adjacency=X, x=x, y=y, font_scale=font_scale)
# ticklabels
with self.assertRaises(TypeError):
xticklabels = "labels"
yticklabels = "labels"
heatmap(X, xticklabels=xticklabels, yticklabels=yticklabels)
with self.assertRaises(ValueError):
xticklabels = ["{}".format(i) for i in range(5)]
yticklabels = ["{}".format(i) for i in range(5)]
heatmap(X, xticklabels=xticklabels, yticklabels=yticklabels)
with self.assertRaises(TypeError):
heatmap(X, title_pad="f")
with self.assertRaises(TypeError):
gridplot([X], title_pad="f")
with self.assertRaises(TypeError):
heatmap(X, hier_label_fontsize="f")
with self.assertRaises(TypeError):
gridplot([X], hier_label_fontsize="f")
def test_common_inputs():
X = er_np(100, 0.5)
grid_labels = ["Test1"]
# test figsize
with pytest.raises(TypeError):
figsize = "bad figsize"
heatmap(X, figsize=figsize)
# test height
height = "1"
with pytest.raises(TypeError):
gridplot([X], grid_labels, height=height)
with pytest.raises(TypeError):
pairplot(X, height=height)
# test title
title = 1
with pytest.raises(TypeError):
heatmap(X, title=title)
with pytest.raises(TypeError):
gridplot([X], grid_labels, title=title)
with pytest.raises(TypeError):
pairplot(X, title=title)
# test context
context = 123
with pytest.raises(TypeError):
heatmap(X, context=context)
with pytest.raises(TypeError):
gridplot([X], grid_labels, context=context)
with pytest.raises(TypeError):
pairplot(X, context=context)
context = "journal"
with pytest.raises(ValueError):
heatmap(X, context=context)
with pytest.raises(ValueError):
gridplot([X], grid_labels, context=context)
with pytest.raises(ValueError):
pairplot(X, context=context)
# test font scales
font_scales = ["1", []]
for font_scale in font_scales:
with pytest.raises(TypeError):
heatmap(X, font_scale=font_scale)
with pytest.raises(TypeError):
gridplot([X], grid_labels, font_scale=font_scale)
with pytest.raises(TypeError):
pairplot(X, cont_scale=font_scale)
# ticklabels
with pytest.raises(TypeError):
xticklabels = "labels"
yticklabels = "labels"
heatmap(X, xticklabels=xticklabels, yticklabels=yticklabels)
with pytest.raises(ValueError):
xticklabels = ["{}".format(i) for i in range(5)]
yticklabels = ["{}".format(i) for i in range(5)]
heatmap(X, xticklabels=xticklabels, yticklabels=yticklabels)
with pytest.raises(TypeError):
heatmap(X, title_pad="f")
with pytest.raises(TypeError):
gridplot([X], title_pad="f")
with pytest.raises(TypeError):
heatmap(X, hier_label_fontsize="f")
with pytest.raises(TypeError):
gridplot([X], hier_label_fontsize="f")