def _saveStateToTar(self, tar, meta, source, sourceLen, message):
# Write the splitting info grouped into subtarfiles
activity = utils.ActivityLog(message)
(jobNum, lastValid, subTar) = (-1, -1, None)
for jobNum, entry in enumerate(source):
if not entry.get(DataSplitter.Invalid, False):
lastValid = jobNum
if jobNum % self._keySize == 0:
self._closeSubTar(tar, subTar)
subTar = self._createSubTar('%03dXX.tgz' % int(jobNum / self._keySize))
activity.finish()
activity = utils.ActivityLog('%s [%d / %d]' % (message, jobNum, sourceLen))
# Determine shortest way to store file list
tmp = entry.pop(DataSplitter.FileList)
savelist = self._getReducedFileList(entry, tmp) # can modify entry
# Write files with infos / filelist
data = str.join('', self._fmt.format(entry, fkt = self._formatFileEntry) + lmap(lambda fn: '=%s\n' % fn, savelist))
self._addToSubTar(subTar, '%05d' % jobNum, data)
# Remove common prefix from info
if DataSplitter.CommonPrefix in entry:
entry.pop(DataSplitter.CommonPrefix)
entry[DataSplitter.FileList] = tmp
self._closeSubTar(tar, subTar)
activity.finish()
# Write metadata to allow reconstruction of data splitter
meta['MaxJobs'] = lastValid + 1
for (fn, data) in [('Metadata', self._fmt.format(meta)), ('Version', '2')]:
self._addToTar(tar, fn, data)
def getWMS(self):
log = utils.ActivityLog('Discovering available WMS services')
wms_best_list = []
for wms in self.listWMS_good():
log = utils.ActivityLog('Discovering available WMS services - pinging %s' % wms)
if wms is None:
continue
ping, pingtime = self.pingDict.get(wms, (None, 0))
if time.time() - pingtime > 30 * 60: # check every ~30min
ping = utils.ping_host(wms.split('://')[1].split('/')[0].split(':')[0])
self.pingDict[wms] = (ping, time.time() + 10 * 60 * random.random()) # 10 min variation
if ping is not None:
wms_best_list.append((wms, ping))
log.finish()
log.finish()
if not wms_best_list:
return None
sort_inplace(wms_best_list, key = lambda name_ping: name_ping[1])
result = choice_exp(wms_best_list)
log = utils.ActivityLog('Discovering available WMS services - using %s' % wms)
if result is not None:
wms, ping = result # reduce timeout by 5min for chosen wms => re-ping every 6 submits
self.pingDict[wms] = (ping, self.pingDict[wms][1] + 5*60)
result = wms
self.updateState()
del log
return result
def readJobs(self, jobLimit):
try:
if not os.path.exists(self._dbPath):
os.mkdir(self._dbPath)
except Exception:
raise JobError("Problem creating work directory '%s'" %
self._dbPath)
candidates = []
for jobFile in fnmatch.filter(os.listdir(self._dbPath), 'job_*.txt'):
try: # 2xsplit is faster than regex
jobNum = int(jobFile.split(".")[0].split("_")[1])
except Exception:
continue
candidates.append((jobNum, jobFile))
(jobMap, maxJobs) = ({}, len(candidates))
activity = utils.ActivityLog('Reading job infos ...')
idx = 0
for (jobNum, jobFile) in sorted(candidates):
idx += 1
if (jobLimit >= 0) and (jobNum >= jobLimit):
self._log.info(
'Stopped reading job infos at job #%d out of %d available job files',
jobNum, len(candidates))
break
jobObj = Job.load(os.path.join(self._dbPath, jobFile))
jobMap[jobNum] = jobObj
if idx % 100 == 0:
activity.finish()
activity = utils.ActivityLog(
'Reading job infos ... %d [%d%%]' %
(idx, (100.0 * idx) / maxJobs))
activity.finish()
return jobMap
def cancelJobs(self, ids):
if not len(ids):
raise StopIteration
activity = utils.ActivityLog('cancelling jobs')
proc = utils.LoggedProcess(self.cancelExec, self.getCancelArguments(self._getRawIDs(ids)))
if proc.wait() != 0:
for line in proc.getError().splitlines():
if not self.unknownID() in line:
utils.eprint(line.strip())
del activity
activity = utils.ActivityLog('waiting for jobs to finish')
time.sleep(5)
for wmsId, jobNum in ids:
path = self._getSandbox(wmsId)
if path is None:
utils.eprint('Sandbox for job %d with wmsId "%s" could not be found' % (jobNum, wmsId))
continue
try:
shutil.rmtree(path)
except Exception:
raise BackendError('Sandbox for job %d with wmsId "%s" could not be deleted' % (jobNum, wmsId))
yield (jobNum, wmsId)
del activity
def submitJobs(self, jobNumList, task):
requestLen = len(jobNumList)
activity = utils.ActivityLog('Submitting jobs... (--%)')
while jobNumList:
jobSubmitNumList = jobNumList[-self._schedd.getSubmitScale():]
del(jobNumList[-self._schedd.getSubmitScale():])
activity = utils.ActivityLog('Submitting jobs... (%2d%%)'%(100*(requestLen-len(jobNumList))/requestLen))
for jobNum in jobSubmitNumList:
self._writeJobConfig(
self.getJobCfgPath(jobNum)[0],
jobNum,
task, {}
)
rawJobInfoMaps = self._schedd.submitJobs(
jobSubmitNumList,
task,
self._getQueryArgs()
)
# Yield (jobNum, wmsId, other data) per jobZ
jobInfoMaps = self._digestQueueInfoMaps(rawJobInfoMaps)
for htcID in jobInfoMaps:
yield (
htcID.gcJobNum,
self._createGcId(htcID),
jobInfoMaps[htcID]
)
del(activity)
def _saveStateToTar(self, tar, meta, source, sourceLen, message):
# Write the splitting info grouped into subtarfiles
activity = utils.ActivityLog(message)
(jobNum, subTar) = (-1, None)
for jobNum, entry in enumerate(source):
if jobNum % 100 == 0:
self._closeSubTar(tar, subTar)
subTar = self._createSubTar('%03dXX.tgz' % int(jobNum / 100))
activity.finish()
activity = utils.ActivityLog('%s [%d / %d]' % (message, jobNum, sourceLen))
# Determine shortest way to store file list
tmp = entry.pop(DataSplitter.FileList)
savelist = self._getReducedFileList(entry, tmp) # can modify entry
# Write files with infos / filelist
for name, data in [('list', str.join('\n', savelist)), ('info', self._fmt.format(entry, fkt = self._formatFileEntry))]:
self._addToSubTar(subTar, os.path.join('%05d' % jobNum, name), data)
# Remove common prefix from info
if DataSplitter.CommonPrefix in entry:
entry.pop(DataSplitter.CommonPrefix)
entry[DataSplitter.FileList] = tmp
self._closeSubTar(tar, subTar)
# Write metadata to allow reconstruction of data splitter
meta['MaxJobs'] = jobNum + 1
self._addToTar(tar, 'Metadata', self._fmt.format(meta))
activity.finish()
def write(cls, fn, pa):
fp = ZipFile(fn, 'w')
try:
keys = sorted(ifilter(lambda p: not p.untracked, pa.getJobKeys()))
fp.write('# %s\n' % json.dumps(keys))
maxN = pa.getMaxJobs()
if maxN:
activity = utils.ActivityLog('Writing parameter dump')
for jobNum in irange(maxN):
activity.finish()
activity = utils.ActivityLog(
'Writing parameter dump [%d/%d]' % (jobNum + 1, maxN))
meta = pa.getJobInfo(jobNum)
if meta.get(ParameterInfo.ACTIVE, True):
fp.write(
'%d\t%s\n' %
(jobNum,
str.join(
'\t',
imap(lambda k: json.dumps(meta.get(k, '')),
keys))))
else:
fp.write(
'%d!\t%s\n' %
(jobNum,
str.join(
'\t',
imap(lambda k: json.dumps(meta.get(k, '')),
keys))))
activity.finish()
finally:
fp.close()
def __init__(self, config, source):
self._rawSource = source
BasicParameterAdapter.__init__(self, config, source)
self._mapJob2PID = {}
if not os.path.isdir(config.getWorkPath()):
os.makedirs(config.getWorkPath())
self._pathJob2PID = config.getWorkPath('params.map.gz')
self._pathParams = config.getWorkPath('params.dat.gz')
# Find out if init should be performed - overrides userResync!
userInit = config.getState('init', detail='parameters')
needInit = False
if not (os.path.exists(self._pathParams)
and os.path.exists(self._pathJob2PID)):
needInit = True # Init needed if no parameter log exists
if userInit and not needInit and (source.getMaxParameters()
is not None):
utils.eprint(
'Re-Initialization will overwrite the current mapping between jobs and parameter/dataset content! This can lead to invalid results!'
)
if utils.getUserBool(
'Do you want to perform a syncronization between the current mapping and the new one to avoid this?',
True):
userInit = False
doInit = userInit or needInit
# Find out if resync should be performed
userResync = config.getState('resync', detail='parameters')
config.setState(False, 'resync', detail='parameters')
needResync = False
pHash = self._rawSource.getHash()
self.storedHash = config.get('parameter hash', pHash, persistent=True)
if self.storedHash != pHash:
needResync = True # Resync needed if parameters have changed
self._log.info('Parameter hash has changed')
self._log.debug('\told hash: %s', self.storedHash)
self._log.debug('\tnew hash: %s', pHash)
config.setState(True, 'init', detail='config')
doResync = (userResync or needResync) and not doInit
if not doResync and not doInit: # Reuse old mapping
activity = utils.ActivityLog(
'Loading cached parameter information')
self.readJob2PID()
activity.finish()
return
elif doResync: # Perform sync
activity = utils.ActivityLog('Syncronizing parameter information')
self.storedHash = None
self._resyncState = self.resync()
activity.finish()
elif doInit: # Write current state
self.writeJob2PID(self._pathJob2PID)
ParameterSource.getClass('GCDumpParameterSource').write(
self._pathParams, self)
config.set('parameter hash', self._rawSource.getHash())
def _tidyUpWorkingDirectory(self, forceCleanup=False):
# active remote submission should clean up when no jobs remain
if self.remoteType == PoolType.SSH or self.remoteType == PoolType.GSISSH:
self.debugOut(
"Revising remote working directory for cleanup. Forced CleanUp: %s"
% forceCleanup)
activity = utils.ActivityLog('revising remote work directory')
# check whether there are any remote working directories remaining
checkProcess = self.Pool.LoggedExecute(
'find %s -maxdepth 1 -type d | wc -l' % self.getWorkdirPath())
try:
if forceCleanup or (int(checkProcess.getOutput()) <= 1):
cleanupProcess = self.Pool.LoggedExecute(
'rm -rf %s' % self.getWorkdirPath())
if cleanupProcess.wait() != 0:
if self.explainError(cleanupProcess,
cleanupProcess.wait()):
return
cleanupProcess.logError(self.errorLog)
raise BackendError(
'Cleanup process %s returned: %s' %
(cleanupProcess.cmd, cleanupProcess.getMessage()))
except Exception:
self._log.warning(
'There might be some junk data left in: %s @ %s',
self.getWorkdirPath(), self.Pool.getDomain())
raise BackendError(
'Unable to clean up remote working directory')
activity.finish()
def checkJobs(self, ids):
if len(ids) == 0:
raise StopIteration
jobNumMap = dict(ids)
jobs = ' '.join(self._getRawIDs(ids))
log = tempfile.mktemp('.log')
activity = utils.ActivityLog('checking job status')
proc = utils.LoggedProcess(self._statusExec, '--level 0 --logfile "%s" %s' % (log, jobs))
for jobOutput in proc.getOutput().split('******')[1:]:
data = {}
for statusRegexLevel0 in self._statusRegexLevel0:
match = re.match(statusRegexLevel0, jobOutput.replace('\n', ' '))
if match:
data = match.groupdict()
break
data['id'] = self._createId(data['rawId'])
yield (jobNumMap.get(data['id']), data['id'], self._statusMap[data.get('status', 'DONE-FAILED')], data)
retCode = proc.wait()
del activity
if retCode != 0:
if self.explainError(proc, retCode):
pass
else:
proc.logError(self.errorLog, log = log, jobs = jobs)
utils.removeFiles([log])
def _submitJob(self, jobNum, module):
activity = utils.ActivityLog('submitting jobs')
try:
sandbox = tempfile.mkdtemp('',
'%s.%04d.' % (module.taskID, jobNum),
self.sandPath)
except Exception:
raise BackendError('Unable to create sandbox directory "%s"!' %
sandbox)
sbPrefix = sandbox.replace(self.sandPath, '').lstrip('/')
def translateTarget(d, s, t):
return (d, s, os.path.join(sbPrefix, t))
self.smSBIn.doTransfer(
ismap(translateTarget, self._getSandboxFilesIn(module)))
self._writeJobConfig(
os.path.join(sandbox, '_jobconfig.sh'), jobNum, module, {
'GC_SANDBOX': sandbox,
'GC_SCRATCH_SEARCH': str.join(' ', self.scratchPath)
})
reqs = self.brokerSite.brokerAdd(module.getRequirements(jobNum),
WMS.SITES)
reqs = dict(self.brokerQueue.brokerAdd(reqs, WMS.QUEUES))
if (self.memory > 0) and (reqs.get(WMS.MEMORY, 0) < self.memory):
reqs[
WMS.
MEMORY] = self.memory # local jobs need higher (more realistic) memory requirements
(stdout, stderr) = (os.path.join(sandbox, 'gc.stdout'),
os.path.join(sandbox, 'gc.stderr'))
jobName = module.getDescription(jobNum).jobName
proc = utils.LoggedProcess(
self.submitExec, '%s %s "%s" %s' %
(self.submitOpts,
self.getSubmitArguments(jobNum, jobName, reqs, sandbox, stdout,
stderr), utils.pathShare('gc-local.sh'),
self.getJobArguments(jobNum, sandbox)))
retCode = proc.wait()
wmsIdText = proc.getOutput().strip().strip('\n')
try:
wmsId = self.parseSubmitOutput(wmsIdText)
except Exception:
wmsId = None
del activity
if retCode != 0:
self._log.warning('%s failed:', self.submitExec)
elif wmsId is None:
self._log.warning('%s did not yield job id:\n%s', self.submitExec,
wmsIdText)
if wmsId:
wmsId = self._createId(wmsId)
open(os.path.join(sandbox, wmsId), 'w')
else:
proc.logError(self.errorLog)
return (jobNum, utils.QM(wmsId, wmsId, None), {'sandbox': sandbox})
def cancelJobs(self, allIds):
if len(allIds) == 0:
raise StopIteration
waitFlag = False
for ids in imap(lambda x: allIds[x:x + 5], irange(0, len(allIds), 5)):
# Delete jobs in groups of 5 - with 5 seconds between groups
if waitFlag and not utils.wait(5):
break
waitFlag = True
jobNumMap = dict(ids)
jobs = self.writeWMSIds(ids)
activity = utils.ActivityLog('cancelling jobs')
proc = LocalProcess(self._cancelExec, '--noint', '--logfile',
'/dev/stderr', '-i', jobs)
retCode = proc.status(timeout=60, terminate=True)
del activity
# select cancelled jobs
for deletedWMSId in ifilter(lambda x: x.startswith('- '),
proc.stdout.iter()):
deletedWMSId = self._createId(deletedWMSId.strip('- \n'))
yield (jobNumMap.get(deletedWMSId), deletedWMSId)
if retCode != 0:
if self.explainError(proc, retCode):
pass
else:
self._log.log_process(proc,
files={'jobs': utils.safeRead(jobs)})
utils.removeFiles([jobs])
def resyncMapping(self, newSplitPath, oldBlocks, newBlocks):
log = utils.ActivityLog('Performing resynchronization of dataset')
(blocksAdded, blocksMissing,
blocksMatching) = DataProvider.resyncSources(oldBlocks, newBlocks)
for rmBlock in blocksMissing: # Files in matching blocks are already sorted
sort_inplace(rmBlock[DataProvider.FileList],
key=lambda x: x[DataProvider.URL])
log.finish()
# User overview and setup starts here
resultRedo = []
resultDisable = []
newSplitPathTMP = newSplitPath + '.tmp'
resyncIter = self._resyncIterator(resultRedo, resultDisable,
blocksAdded, blocksMissing,
blocksMatching)
self.savePartitions(
newSplitPathTMP,
resyncIter,
sourceLen=self.getMaxJobs(),
message=
'Performing resynchronization of dataset map (progress is estimated)'
)
if self._interactive:
# TODO: print info and ask
if not utils.getUserBool(
'Do you want to use the new dataset partition?', False):
return None
os.rename(newSplitPathTMP, newSplitPath)
return (resultRedo, resultDisable)
def checkJobs(self, ids):
if not len(ids):
raise StopIteration
activity = utils.ActivityLog('checking job status')
proc = utils.LoggedProcess(self.statusExec, self.getCheckArguments(self._getRawIDs(ids)))
tmp = {}
for data in self.parseStatus(proc.iter()):
wmsId = self._createId(data['id'])
tmp[wmsId] = (wmsId, self.parseJobState(data['status']), data)
for wmsId, jobNum in ids:
if wmsId not in tmp:
yield (jobNum, wmsId, Job.DONE, {})
else:
yield tuple([jobNum] + list(tmp[wmsId]))
retCode = proc.wait()
del activity
if retCode != 0:
for line in proc.getError().splitlines():
if not self.unknownID() in line:
utils.eprint(line)
def readJobs(self, jobLimit):
jobMap = {}
maxJobs = 0
if os.path.exists(self._dbFile):
try:
tar = zipfile.ZipFile(self._dbFile, 'r', zipfile.ZIP_DEFLATED)
except Exception: # Try to recover job archive
utils.eprint('=' * 40 + '\nStarting recovery of broken job database')
utils.eprint(' => Answer "y" if asked "Is this a single-disk archive?"!\n' + '=' * 40)
os.system('zip -FF %s --out %s.tmp 2> /dev/null' % (self._dbFile, self._dbFile))
os.rename(self._dbFile, self._dbFile + '.broken')
os.rename(self._dbFile + '.tmp', self._dbFile)
tar = zipfile.ZipFile(self._dbFile, 'r', zipfile.ZIP_DEFLATED)
utils.removeFiles([self._dbFile + '.broken'])
brokenList = []
for idx, fnTarInfo in enumerate(tar.namelist()):
(jobNum, tid) = tuple(imap(lambda s: int(s[1:]), fnTarInfo.split('_', 1)))
try:
fp = tar.open(fnTarInfo)
try:
fp.read()
finally:
fp.close()
except Exception:
pass
for broken in brokenList:
os.system('zip %s -d %s' % (self._dbFile, broken))
utils.eprint('Recover completed!')
activity = utils.ActivityLog('Reading job transactions ...')
maxJobs = len(tar.namelist())
tMap = {}
for idx, fnTarInfo in enumerate(tar.namelist()):
(jobNum, tid) = tuple(imap(lambda s: int(s[1:]), fnTarInfo.split('_', 1)))
if tid < tMap.get(jobNum, 0):
continue
data = utils.DictFormat(escapeString = True).parse(tar.open(fnTarInfo).read())
jobMap[jobNum] = Job.loadData(fnTarInfo, data)
tMap[jobNum] = tid
if idx % 100 == 0:
activity.finish()
activity = utils.ActivityLog('Reading job transactions ... %d [%d%%]' % (idx, (100.0 * idx) / maxJobs))
self._serial = maxJobs
return jobMap
def guiWait(timeout):
onResize(None, None)
oldHandler = signal.signal(signal.SIGWINCH, onResize)
result = utils.wait(timeout)
signal.signal(signal.SIGWINCH, oldHandler)
if (time.time() - guiWait.lastwait > 10) and not timeout:
tmp = utils.ActivityLog('') # force display update
tmp.finish()
guiWait.lastwait = time.time()
return result
def getEntries(self, path, metadata, events, seList, objStore):
for jobNum in self._selected:
log = utils.ActivityLog('Reading job logs - [%d / %d]' %
(jobNum, self._selected[-1]))
metadata['GC_JOBNUM'] = jobNum
objStore.update({
'GC_TASK': self._extTask,
'GC_WORKDIR': self._extWorkDir
})
yield (os.path.join(self._extWorkDir, 'output', 'job_%d' % jobNum),
metadata, events, seList, objStore)
log.finish()
def cancelJobs(self, wmsJobIdList):
if len(wmsJobIdList) == 0:
raise StopIteration
self.debugOut("Started canceling: %s" % set(lzip(*wmsJobIdList)[0]))
self.debugPool()
wmsIdList = list(self._getRawIDs(wmsJobIdList))
wmsIdArgument = " ".join(wmsIdList)
wmsToJobMap = dict(wmsJobIdList)
activity = utils.ActivityLog('cancelling jobs')
cancelProcess = self.Pool.LoggedExecute(
self.cancelExec, '%(jobIDs)s' % {"jobIDs": wmsIdArgument})
# check if canceling actually worked
for cancelReturnLine in cancelProcess.iter():
if (cancelReturnLine != '\n') and ('marked for removal'
in cancelReturnLine):
try:
wmsID = cancelReturnLine.split()[1]
wmsIdList.remove(wmsID)
wmsID = self._createId(wmsID)
jobNum = wmsToJobMap[wmsID]
yield (jobNum, wmsID)
except KeyError: # mismatch in GC<->Condor mapping
self._log.error('Error with canceled condor job %s', wmsID)
self._log.error('\tCondor IDs: %s', wmsIdList)
self._log.error('\tProcess message: %s',
cancelProcess.getMessage())
raise BackendError('Error while cancelling job %s' % wmsID)
# clean up remote work dir
if self.remoteType == PoolType.SSH or self.remoteType == PoolType.GSISSH:
cleanupProcess = self.Pool.LoggedExecute(
'rm -rf %s' % self.getWorkdirPath(jobNum))
self.debugOut("Cleaning up remote workdir:\n " +
cleanupProcess.cmd)
if cleanupProcess.wait() != 0:
if self.explainError(cleanupProcess,
cleanupProcess.wait()):
pass
else:
cleanupProcess.logError(self.errorLog)
retCode = cancelProcess.wait()
if retCode != 0:
if self.explainError(cancelProcess, retCode):
pass
else:
cancelProcess.logError(self.errorLog)
# clean up if necessary
activity.finish()
self._tidyUpWorkingDirectory()
self.debugFlush()
def getEntries(self, path, metadata, events, seList, objStore):
metadata['GC_SOURCE_DIR'] = self._path
counter = 0
from grid_control.backends.storage import se_ls
proc = se_ls(self._path)
for fn in proc.stdout.iter(timeout=60):
log = utils.ActivityLog('Reading source directory - [%d]' %
counter)
yield (os.path.join(self._path, fn.strip()), metadata, events,
seList, objStore)
counter += 1
log.finish()
if proc.status(timeout=0) != 0:
self._log.log_process(proc)
def cancelJobs(self, wmsJobIdList):
if not len(wmsJobIdList):
raise StopIteration
activity = utils.ActivityLog('Canceling jobs...')
assert not bool(lfilter( lambda htcid: htcid.scheddURI != self._schedd.getURI(), self._splitGcRequests(wmsJobIdList))), 'Bug! Got jobs at Schedds %s, but servicing only Schedd %s' % (lfilter( lambda itr: itr.scheddURI != self._schedd.getURI(), self._splitGcRequests(wmsJobIdList)), self._schedd.getURI())
canceledJobs = self._schedd.cancelJobs(
self._splitGcRequests(wmsJobIdList)
)
# Yield ( jobNum, wmsID) for canceled jobs
for htcJobID in canceledJobs:
yield (
htcJobID.gcJobNum,
self._createGcId(htcJobID)
)
del activity
def _getJobsOutput(self, wmsJobIdList):
if not len(wmsJobIdList):
raise StopIteration
activity = utils.ActivityLog('Fetching jobs...')
assert not bool(lfilter( lambda htcid: htcid.scheddURI != self._schedd.getURI(), self._splitGcRequests(wmsJobIdList))), 'Bug! Got jobs at Schedds %s, but servicing only Schedd %s' % (lfilter( lambda itr: itr.scheddURI != self._schedd.getURI(), self._splitGcRequests(wmsJobIdList)), self._schedd.getURI())
returnedJobs = self._schedd.getJobsOutput(
self._splitGcRequests(wmsJobIdList)
)
# Yield (jobNum, outputPath) per retrieved job
for htcID in returnedJobs:
yield (
htcID.gcJobNum,
self.getSandboxPath(htcID.gcJobNum)
)
del activity
def _getJobsOutput(self, wmsJobIdList):
if not len(wmsJobIdList):
raise StopIteration
self.debugOut("Started retrieving: %s" % set(lzip(*wmsJobIdList)[0]))
activity = utils.ActivityLog('retrieving job outputs')
for wmsId, jobNum in wmsJobIdList:
sandpath = self.getSandboxPath(jobNum)
if sandpath is None:
yield (jobNum, None)
continue
# when working with a remote spool schedd, tell condor to return files
if self.remoteType == PoolType.SPOOL:
transferProcess = self.Pool.LoggedExecute(
self.transferExec,
'%(jobID)s' % {"jobID": self._splitId(wmsId)})
if transferProcess.wait() != 0:
if self.explainError(transferProcess,
transferProcess.wait()):
pass
else:
transferProcess.logError(self.errorLog)
# when working with a remote [gsi]ssh schedd, manually return files
elif self.remoteType == PoolType.SSH or self.remoteType == PoolType.GSISSH:
transferProcess = self.Pool.LoggedCopyFromRemote(
self.getWorkdirPath(jobNum), self.getSandboxPath())
if transferProcess.wait() != 0:
if self.explainError(transferProcess,
transferProcess.wait()):
pass
else:
transferProcess.logError(self.errorLog)
# clean up remote working directory
cleanupProcess = self.Pool.LoggedExecute(
'rm -rf %s' % self.getWorkdirPath(jobNum))
self.debugOut("Cleaning up remote workdir: JobID %s\n %s" %
(jobNum, cleanupProcess.cmd))
if cleanupProcess.wait() != 0:
if self.explainError(cleanupProcess,
cleanupProcess.wait()):
pass
else:
cleanupProcess.logError(self.errorLog)
yield (jobNum, sandpath)
# clean up if necessary
activity.finish()
self._tidyUpWorkingDirectory()
self.debugFlush()
def getBlocks(self, silent=True):
def prepareBlocks():
# Validation, Filtering & Naming:
for block in self.getBlocksInternal():
assert (block[DataProvider.Dataset])
block.setdefault(DataProvider.BlockName, '0')
block.setdefault(DataProvider.Provider,
self.__class__.__name__)
block.setdefault(DataProvider.Locations, None)
if self._datasetID:
block[DataProvider.DatasetID] = self._datasetID
events = sum(
imap(lambda x: x[DataProvider.NEntries],
block[DataProvider.FileList]))
block.setdefault(DataProvider.NEntries, events)
if self._datasetNick:
block[DataProvider.Nickname] = self._datasetNick
elif self._nickProducer:
block = self._nickProducer.processBlock(block)
if not block:
raise DatasetError('Nickname producer failed!')
yield block
if self._cache_block is None:
log = utils.ActivityLog('Retrieving %s' % self._datasetExpr)
try:
if self._passthrough:
self._cache_block = list(
self._stats.process(prepareBlocks()))
else:
self._cache_block = list(
self._stats.process(
self._datasetProcessor.process(prepareBlocks())))
except Exception:
raise DatasetError('Unable to retrieve dataset %s' %
repr(self._datasetExpr))
statString = ' * Dataset '
if self._datasetNick:
statString += repr(self._datasetNick)
elif self._datasetExpr:
statString += repr(self._datasetExpr)
log.finish()
statString += '\tcontains %d block(s) with %s' % self._stats.getStats(
)
if not silent:
self._log.info(statString)
return self._cache_block
def __init__(self, config, jobLimit = -1, jobSelector = None):
dbPath = config.getWorkPath('jobs')
self._dbFile = config.getWorkPath('jobs.zip')
if os.path.exists(dbPath) and os.path.isdir(dbPath) and not os.path.exists(self._dbFile):
activity = utils.ActivityLog('Converting job database...')
self._serial = 0
try:
oldDB = JobDB(config)
oldDB.readJobs(-1)
for jobNum in oldDB.getJobs():
self.commit(jobNum, oldDB.get(jobNum))
except Exception:
utils.removeFiles([self._dbFile])
raise
activity.finish()
ZippedJobDB.__init__(self, config, jobLimit, jobSelector)
def getEntries(self, path, metadata, events, seList, objStore):
allDirs = ifilter(lambda fn: fn.startswith('job_'),
os.listdir(self._extOutputDir))
for idx, dirName in enumerate(allDirs):
log = utils.ActivityLog('Reading job logs - [%d / %d]' %
(idx, len(allDirs)))
try:
metadata['GC_JOBNUM'] = int(dirName.split('_')[1])
objStore['GC_WORKDIR'] = self._extWorkDir
log.finish()
if self._selector and self._selector(metadata['GC_JOBNUM'],
None):
yield (os.path.join(self._extOutputDir, dirName), metadata,
events, seList, objStore)
except Exception:
pass
log.finish()
def _getJobsOutput(self, ids):
if not len(ids):
raise StopIteration
activity = utils.ActivityLog('retrieving job outputs')
for wmsId, jobNum in ids:
path = self._getSandbox(wmsId)
if path is None:
yield (jobNum, None)
continue
# Cleanup sandbox
outFiles = lchain(imap(lambda pat: glob.glob(os.path.join(path, pat)), self.outputFiles))
utils.removeFiles(ifilter(lambda x: x not in outFiles, imap(lambda fn: os.path.join(path, fn), os.listdir(path))))
yield (jobNum, path)
del activity
def checkJobs(self, wmsJobIdList):
if not len(wmsJobIdList):
raise StopIteration
activity = utils.ActivityLog('Checking jobs...')
assert not bool(lfilter( lambda htcid: htcid.scheddURI != self._schedd.getURI(), self._splitGcRequests(wmsJobIdList))), 'Bug! Got jobs at Schedds %s, but servicing only Schedd %s' % (lfilter( lambda itr: itr.scheddURI != self._schedd.getURI(), self._splitGcRequests(wmsJobIdList)), self._schedd.getURI())
rawJobInfoMaps = self._schedd.checkJobs(
self._splitGcRequests(wmsJobIdList),
self._getQueryArgs()
)
# Yield (jobNum, wmsId, state, other data) per active jobs
jobInfoMaps = self._digestQueueInfoMaps(rawJobInfoMaps)
for htcID in jobInfoMaps:
yield (
htcID.gcJobNum,
self._createGcId(htcID),
self._statusMap[jobInfoMaps[htcID]['state']][0],
jobInfoMaps[htcID]
)
del(activity)
def __init__(self, path):
activity = utils.ActivityLog('Reading dataset partition file')
self._lock = GCLock()
self._fmt = utils.DictFormat()
self._tar = tarfile.open(path, 'r:')
(self._cacheKey, self._cacheTar) = (None, None)
metadata = self._fmt.parse(self._tar.extractfile('Metadata').readlines(), keyParser = {None: str})
self.maxJobs = metadata.pop('MaxJobs')
self.classname = metadata.pop('ClassName')
self.metadata = {'dataset': dict(ifilter(lambda k_v: not k_v[0].startswith('['), metadata.items()))}
for (k, v) in ifilter(lambda k_v: k_v[0].startswith('['), metadata.items()):
self.metadata.setdefault('dataset %s' % k.split(']')[0].lstrip('['), {})[k.split(']')[1].strip()] = v
activity.finish()
self._parserMap = { None: str, DataSplitter.NEntries: int, DataSplitter.Skipped: int,
DataSplitter.DatasetID: int, DataSplitter.Invalid: parseBool,
DataSplitter.Locations: lambda x: parseList(x, ','),
DataSplitter.MetadataHeader: parseJSON,
DataSplitter.Metadata: lambda x: parseJSON(x.strip("'")) }
def matchSites(self, endpoint):
log = utils.ActivityLog('Discovering available WMS services - testing %s' % endpoint)
checkArgs = ['-a']
if endpoint:
checkArgs.extend(['-e', endpoint])
checkArgs.append(utils.pathShare('null.jdl'))
proc = LocalProcess(self._exeGliteWMSJobListMatch, *checkArgs)
result = []
for line in proc.stdout.iter(timeout = 3):
if line.startswith(' - '):
result.append(line[3:].strip())
if proc.status(timeout = 0) is None:
self.wms_timeout[endpoint] = self.wms_timeout.get(endpoint, 0) + 1
if self.wms_timeout.get(endpoint, 0) > 10: # remove endpoints after 10 failures
self.wms_all.remove(endpoint)
log.finish()
return []
log.finish()
return result
def cancelJobs(self, allIds):
if len(allIds) == 0:
raise StopIteration
waitFlag = False
for ids in imap(lambda x: allIds[x:x+self._nJobsPerChunk], irange(0, len(allIds), self._nJobsPerChunk)):
# Delete jobs in groups of 5 - with 5 seconds between groups
if waitFlag and not utils.wait(5):
break
waitFlag = True
jobNumMap = dict(ids)
jobs = ' '.join(self._getRawIDs(ids))
log = tempfile.mktemp('.log')
activity = utils.ActivityLog('cancelling jobs')
proc = utils.LoggedProcess(self._cancelExec, '--noint --logfile "%s" %s' % (log, jobs))
retCode = proc.wait()
del activity
# select cancelled jobs
for rawId in self._getRawIDs(ids):
deletedWMSId = self._createId(rawId)
yield (jobNumMap.get(deletedWMSId), deletedWMSId)
if retCode != 0:
if self.explainError(proc, retCode):
pass
else:
proc.logError(self.errorLog, log = log)
purgeLog = tempfile.mktemp('.log')
purgeProc = utils.LoggedProcess(self._purgeExec, '--noint --logfile "%s" %s' % (purgeLog, jobs))
retCode = purgeProc.wait()
if retCode != 0:
if self.explainError(purgeProc, retCode):
pass
else:
proc.logError(self.errorLog, log = purgeLog, jobs = jobs)
utils.removeFiles([log, purgeLog])