Beispiel #1
0
 def get(self, uuidname):
     checkplot = CheckUUIDPlot(
         gsxa_uuid=uuidname,
         name_uuid="gsea_uuid",
         purpose="paenplot",
         rplot="paen_plot.R",
         precol="preanalysised",
         gsxacol="preanalysised_enrichment",
     )
     res = checkplot.check_run()
     if res["run"]:
         checkplot.plot()
     return {"paenplotuuid": res["uuid"], "paentableuuid": uuidname}
Beispiel #2
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    def get(self, uuidname):
        checkplot = CheckUUIDPlot(
            gsxa_uuid=uuidname,
            name_uuid="gsva_uuid",
            purpose="cnvsurvivalgenesetplot",
            rplot="cnv_geneset_survival_profile.R",
            precol="preanalysised",
            gsxacol="preanalysised_cnvgeneset",
        )
        res = checkplot.check_run()
        if res["run"]:
            checkplot.plot()

        return {"cnvsurvivalgenesetplotuuid": res["uuid"], "cnvsurvivalgenesettableuuid": uuidname}
Beispiel #3
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    def get(self, uuidname):
        checkplot = CheckUUIDPlot(
            gsxa_uuid=uuidname,
            name_uuid="gsva_uuid",
            purpose="exprgsvaplot",
            rplot="expr_gsva_plot.R",
            precol="preanalysised",
            gsxacol="preanalysised_gsva",
        )
        res = checkplot.check_run()
        if res["run"]:
            checkplot.plot()

        return {"exprgsvaplotuuid": res["uuid"], "exprgsvatableuuid": uuidname}
Beispiel #4
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    def get(self, uuidname):
        checkplot = CheckUUIDPlot(
            gsxa_uuid=uuidname,
            name_uuid="gsva_uuid",
            purpose="snvimmunegenesetcorplot",
            rplot="snv_geneset_immune_profile.R",
            precol="preanalysised",
            gsxacol="preanalysised_snvgeneset",
        )
        res = checkplot.check_run()
        if res["run"]:
            checkplot.plot()

        return {
            "snvimmunegenesetcorplotuuid": res["uuid"],
            "snvimmunegenesetcortableuuid": uuidname
        }