del g_sym
euler_sym[sym, ...] = tmp
del tmp
# make sure all of the euler angles within the appropriate
# ranges (eg. not negative)
print "initial: euler angles less than zero: %s" % np.sum(euler_sym < 0)
lt = euler_sym < 0.0
euler_sym += 2 * np.pi * lt
print "final: euler angles less than zero: %s" % np.sum(euler_sym < 0)
"""Calculate the GSH coefficients for each symmetric zone"""
st = time.time()
X = gsh.gsh_eval(euler_sym, np.arange(1, N_L))
print "basis evaluation complete: %ss" % np.round(time.time() - st, 3)
print "size of X: %sgb" % str(X.nbytes / (1E9))
print "X shape: %s" % str(X.shape)
"""Error check the GSH coefficients in terms of symmetry"""
error = np.zeros((n_sym - 1, n_tot, N_L - 1))
for sym in xrange(n_sym - 1):
error[sym, ...] = np.abs(np.real(X[0, ...]) - np.real(X[sym, ...]))
print "maximum error: %s" % error.max()
print "coefficient magnitude closest to zero: %s" % str(np.abs(X).min())
phi1max = 2*np.pi phimax = np.pi/2. phi2max = np.pi/2. # n_tot = 72000 # euler = euler_rand(n_tot, phi1max, phimax, phi2max) inc = 15. euler, n_tot = euler_grid_center(inc, phi1max, phimax, phi2max) """ Calculate X """ st = time.time() X = gsh.gsh_eval(euler, np.arange(N_L)) print "basis evaluation complete: %ss" % np.round(time.time()-st, 3) print "size of X: %sgb" % np.str(X.nbytes/(1E9)) """ Generate Y """ bvec = [0, 10, 20, 60, 140, 280] bval = [40., 20., -10., 6., -4., 1.] Y = np.dot(bval, X[:, bvec].T) """ Perform the regression """ coeff = np.zeros(N_L, dtype='complex128')
f = h5py.File(C['XcalcGSH_output'] % str(tnum).zfill(5), 'w')
for p in xrange(ii_stt, ii_end):
st = time.time()
vec = np.zeros(N_par, dtype='complex128')
# for jj in xrange(C['XcalcGSH_nchunks']):
# jj_stt = jj*ch_len # start index
# jj_end = jj_stt + ch_len
# if jj_end > N_par:
# jj_end = N_par
# tmp = gsh.gsh_eval(X[ii_stt:ii_end, :], [p])
# vec[ii_stt:ii_end] = np.squeeze(tmp)
vec = np.squeeze(gsh.gsh_eval(X, [p]))
set_id = 'p_%s' % str(p).zfill(5)
f.create_dataset(set_id, data=vec)
fn.WP(set_id, filename)
msg = "GSH eval time: %ss" % np.round(time.time()-st, 3)
fn.WP(msg, filename)
f.close()
f_flag = open("flag%s" % str(tnum).zfill(5), 'w')
f_flag.close()
ch_len = np.int64(np.ceil(np.float(N_par)/C['XcalcGSH_nchunks']))
f = h5py.File(C['XcalcGSH_output'] % str(tnum).zfill(5), 'w')
for p in xrange(ii_stt, ii_end):
st = time.time()
vec = np.zeros(N_par, dtype='complex128')
for jj in xrange(C['XcalcGSH_nchunks']):
jj_stt = jj*ch_len # start index
jj_end = jj_stt + ch_len
if jj_end > N_par:
jj_end = N_par
tmp = gsh.gsh_eval(g[ii_stt:ii_end, :], [p])
vec[ii_stt:ii_end] = np.squeeze(tmp)
set_id = 'p_%s' % str(p).zfill(5)
f.create_dataset(set_id, data=vec)
fn.WP(set_id, filename)
msg = "GSH eval time: %ss" % np.round(time.time()-st, 3)
fn.WP(msg, filename)
f.close()
f_flag = open("flag%s" % str(tnum).zfill(5), 'w')
f_flag.close()
emat[:, 0] = np.random.rand(n_tot) * np.pi / 2.
emat[:, 1] = np.random.rand(n_tot) * np.pi / 2.
emat[:, 2] = np.random.rand(n_tot) * np.pi / 2.
print emat.shape
""" calculate XhX """
lmax = 10
XhX = np.zeros((lmax, lmax), dtype='complex128')
for ii in xrange(lmax):
print ii
for jj in xrange(lmax):
xii = gsh.gsh_eval(emat, [ii])[:, 0]
xjj = gsh.gsh_eval(emat, [jj])[:, 0]
XhX[ii, jj] = np.sum(xii.conj() * xjj * np.sin(emat[:, 1]))
# XhX[ii, jj] = np.dot(xii.conj(), xjj)
""" plot the XhX matrix """
plt.figure(1)
plt.subplot(121)
ax = plt.imshow(np.real(XhX), origin='lower', interpolation='none', cmap='jet')
plt.title("real(XhX): GSH")
plt.colorbar(ax)
plt.subplot(122)
def gen():
C = constants.const()
filename = 'log_gen_test_data.txt'
inc2rad = C['inc'] * np.pi / 180.
"""get the test euler angle set"""
thetavec = (np.arange(C['n_th']) + 0.5) * inc2rad
phi1vec = (np.arange(C['n_p1']) + 0.5) * inc2rad
phivec = (np.arange(C['n_P']) + 0.5) * inc2rad
phi2vec = (np.arange(C['n_p2']) + 0.5) * inc2rad
phi1, phi, phi2 = np.meshgrid(phi1vec, phivec, phi2vec)
phi1 = phi1.reshape(phi1.size)
phi = phi.reshape(phi.size)
phi2 = phi2.reshape(phi2.size)
angles = np.zeros([C['n_tot'], 4], dtype='float64')
for ii in xrange(C['n_th']):
ii_stt = ii * C['n_eul']
ii_end = ii_stt + C['n_eul']
angles[ii_stt:ii_end, 0] = thetavec[ii]
angles[ii_stt:ii_end, 1] = phi1
angles[ii_stt:ii_end, 2] = phi
angles[ii_stt:ii_end, 3] = phi2
"""Generate test Y"""
bvec = np.random.randint(low=0, high=C['cmax'], size=(5))
bvec[0] = 0
bvec = np.unique(bvec)
bval = np.random.randint(low=1, high=10, size=bvec.size)
msg = "bvec: %s" % str(bvec)
fn.WP(msg, filename)
msg = "bval: %s" % str(bval)
fn.WP(msg, filename)
cmat = np.unravel_index(np.arange(C['cmax']), C['N_tuple'])
cmat = np.array(cmat).T
Y = np.zeros((C['n_tot']), dtype='complex128')
for ii in xrange(bvec.size):
p, q = cmat[bvec[ii], :]
tmpgsh = gsh.gsh_eval(angles[:, 1:4], [p])
tmpcos = np.cos(q * np.pi * angles[:, 0] / C['L_th'])
Y += bval[ii] * np.squeeze(tmpgsh) * tmpcos
alldata = np.zeros((C['n_tot'], 14), dtype='complex128')
alldata[:, :4] = angles
alldata[:, 4] = Y
f1 = h5py.File(C['combineread_output'], 'w')
f1.create_dataset("var_set", data=alldata)
f1.close()
