def __init__(self, geSource, regionBoundaryIter):
GEFilter.__init__(self, geSource)
self._boundaryRegions = {}
for region in regionBoundaryIter:
if not region.chr in self._boundaryRegions:
self._boundaryRegions[region.chr] = []
self._boundaryRegions[region.chr].append(region)
def __init__(self, geSource):
GEFilter.__init__(self, geSource)
def __init__(self, geSource, filterList, strict=True):
GEFilter.__init__(self, geSource)
self._filterSet = set(filterList)
self._strict = strict
def __init__(self, geSource, filterList, strict=True):
GEFilter.__init__(self, geSource)
self._filterSet = set(filterList)
self._strict = strict
def __init__(self, geSource):
GEFilter.__init__(self, geSource)
