def trackNameExists(genome, trackName):
"""
Check if there exists a track <trackName> in genome <genome>.
:param genome: String, name of genome
:param trackName: String, name of track
:return: True if track exists, false else.
"""
return ProcTrackOptions.isValidTrack(genome, trackName)
def yielder(self, curTn):
#if self._avoidLiterature and curTn == GenomeInfo.getPropertyTrackName(self._genome, 'literature'):
# return
for subtype in ProcTrackOptions.getSubtypes(self._genome, curTn, self._fullAccess):
#if self._avoidLiterature and subtype == 'Literature':
if subtype[0] in ['.','_']:
continue
newTn = curTn + [subtype]
doBreak = False
for subTn in self.yielder(newTn):
yield subTn
if ProcTrackOptions.isValidTrack(self._genome, curTn, self._fullAccess):
yield curTn
def _calcAndStoreSubTrackCount(self, trackName):
ti = TrackInfo(self._genome, trackName)
trackCount = 0
for subTrackName in ProcTrackOptions.getSubtypes(self._genome, trackName, True):
subTrackCount = TrackInfo(self._genome, trackName + [subTrackName]).subTrackCount
if subTrackCount:
trackCount += subTrackCount
if ti.isValid():
trackCount += 1
ti.subTrackCount = trackCount
ti.store()
def _calcAndStoreSubTrackCount(self, trackName):
ti = TrackInfo(self._genome, trackName)
trackCount = 0
for subTrackName in ProcTrackOptions.getSubtypes(
self._genome, trackName, True):
subTrackCount = TrackInfo(self._genome,
trackName + [subTrackName]).subTrackCount
if subTrackCount:
trackCount += subTrackCount
if ti.isValid():
trackCount += 1
ti.subTrackCount = trackCount
ti.store()
def _trackNameExists(genome, trackName):
from gtrackcore.track.hierarchy.ProcTrackOptions import ProcTrackOptions
if not ProcTrackOptions.isValidTrack(genome, trackName):
print 'Track "%s" of genome "%s" is not valid.' % (':'.join(trackName), genome)
return False
return True
def _trackNameExists(genome, trackName):
from gtrackcore.track.hierarchy.ProcTrackOptions import ProcTrackOptions
if not ProcTrackOptions.isValidTrack(genome, trackName):
print 'Track "%s" of genome "%s" is not valid.' % (':'.join(trackName), genome)
return False
return True
