formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
fh.setFormatter(formatter)
log.addHandler(fh)
#################
### LOAD SCAN MAP ###
if opts.map:
with open(opts.map) as data:
scan_file_map = json.load(data)
#####################
SCRIPTDIR = os.path.abspath(os.path.curdir) + '/'
DCMADDRESS = 'dicom://' + opts.host + ':8104/HCP'
#idb = HcpInterface(config='/home/NRG/mhilem01/.hcpxnat_intradb_dev.cfg')
idb = HcpInterface(config='/data/intradb/home/hileman/.hcpxnat_intradb.cfg')
idb.url = 'https://' + opts.host
def get_subjects_from(directory):
"""
Assumes the source directory contains subject labels
"""
os.chdir(directory)
dirs = [d for d in os.listdir(os.curdir)
if os.path.isdir(os.path.join(os.curdir, d))]
subs = []
for d in dirs:
if d.isdigit():
subs.append(d)
return subs
def process_dicoms(sub_label, dirname, fnames):
