with open('brain_region_data.csv', 'rt') as brain_open:
cell_IDs+= [r[3] for r in csv.reader(brain_open)][1:]
with open('neuron_data_curated.csv', 'rt') as neuron_open:
cell_IDs+= [r[3] for r in csv.reader(neuron_open)][1:]
with open('lost_cat.csv', 'rt') as f:
cell_IDs += [r[3] for r in csv.reader(f)][1:]
#print(cell_IDs)
n=len(cell_IDs)
#print('We have',n,'IDs')
#print('')
Curie_Prefixes= v.getCuriePrefixes()[1:]
Curie_Prefixes.append('nlx_only')
print(Curie_Prefixes)
for IDs in cell_IDs:
for Prefixes in Curie_Prefixes:
have=(Prefixes+':'+IDs)
have=v.findById(have)
if have!=None:
#print(IDs)
NIF_Directory[Prefixes].append(IDs)
count=count+1
#print(count)
break
if have==None:
NIF_Directory['nlx_only'].append(IDs)
with open('cell_layer_data.csv', 'rt') as cell_open:
cell_IDs = [r[3] for r in csv.reader(cell_open)][1:]
with open('brain_region_data.csv', 'rt') as brain_open:
cell_IDs += [r[3] for r in csv.reader(brain_open)][1:]
with open('neuron_data_curated.csv', 'rt') as neuron_open:
cell_IDs += [r[3] for r in csv.reader(neuron_open)][1:]
with open('lost_cat.csv', 'rt') as f:
cell_IDs += [r[3] for r in csv.reader(f)][1:]
#print(cell_IDs)
n = len(cell_IDs)
#print('We have',n,'IDs')
#print('')
Curie_Prefixes = v.getCuriePrefixes()[1:]
Curie_Prefixes.append('nlx_only')
print(Curie_Prefixes)
for IDs in cell_IDs:
for Prefixes in Curie_Prefixes:
have = (Prefixes + ':' + IDs)
have = v.findById(have)
if have != None:
#print(IDs)
NIF_Directory[Prefixes].append(IDs)
count = count + 1
#print(count)
break
if have == None:
NIF_Directory['nlx_only'].append(IDs)
import json
import csv
import json
from IPython import embed
from collections import *
from heatmaps.scigraph_client import Graph, Vocabulary
from collected import data
from rdflib import *
import rdflib
from rdflib.namespace import RDF
g = Graph()
v = Vocabulary()
v.getCuriePrefixes()
'''
.namespace to map long names
.graph to make tuples
'''
ns = Namespace
person = ns(
"http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug"
) + ns(
"http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug"
)
#print(person)
rawInput = ns(
"http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import"
)
nueroNames = ns(
"http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource"
)
