def test_get_bai():
result = hf.get_bai('T3')
expected = 'T3' + hf.get_filext('bam_idx')
assert result == expected
def test_get_faidx():
result = hf.get_faidx()
expected = ['data/fasta/chr22' + e for e in hf.get_filext('fasta_idx')]
assert result == expected
def test_get_fasta():
result = hf.get_fasta()
expected = 'data/fasta/chr22' + hf.get_filext('fasta')
assert result == expected
def test_get_filext__unknownextension_exception():
with pytest.raises(Exception):
hf.get_filext('nobodyknowns')
def test_get_filext(test_input, expected):
result = hf.get_filext(test_input)
assert result == expected
def test_get_filext__unknownextension_exception():
with pytest.raises(Exception) as exc_info:
hf.get_filext('nobodyknows')
assert str(exc_info) == "Unknown input file format 'nobodyknows'."