def get(self):
"""List all patients"""
only = [
"id",
"hn",
"clinicID",
"governmentID",
"napID",
"name",
"sex",
"gender",
"nationality",
"healthInsurance",
"dateOfBirth",
"phoneNumbers",
]
patient_schema = PatientSchema(
many=True, exclude=PatientModel.relationship_keys, only=only
)
patients_query = PatientModel.query.order_by(
PatientModel.clinicID
).all()
patients = patient_schema.dump(patients_query)
return patients, 200
def patch_patient(patient_data):
patient_data["dateOfBirth"] = convertToDate(
patient_data["dateOfBirth"])
patient_schema = PatientSchema(many=False, unknown="EXCLUDE")
patient = PatientModel.query.filter(
PatientModel.hn == patient_data["hn"]).first()
try:
if patient:
patient_data["id"] = patient.id
new_patient_model = patient_schema.load(patient_data,
transient=True)
new_patient_dict = patient_schema.dump(new_patient_model)
patient.update(**new_patient_dict)
else:
patient = patient_schema.load(patient_data)
patient.imported = True
return patient
except Exception as e:
current_app.logger.warn(
f"Unable to import patient HN {patient_data['hn']}"
f" with this error {e}, skipping.")
raise e
def post(self):
"""Add new patient"""
patient = parser.parse(PatientSchema, request)
db.session.add(patient)
db.session.commit()
patient_schema = PatientSchema()
return patient_schema.dump(patient), 200
def get(self, args, **kwargs):
"""Get patient with the UUID"""
if args["only_dermographic"]:
patient_schema = PatientSchema(
many=False, exclude=PatientModel.relationship_keys
)
else:
patient_schema = PatientSchema(many=False)
patient = PatientModel.query.filter_by(id=args["patient_uuid"]).first()
return patient_schema.dump(patient), 200
def get(self, visitDate):
"""List all appointments"""
only = ["id", "hn", "clinicID", "name"]
patient_schema = PatientSchema(many=True, only=only)
patients_query = (
db.session.query(PatientModel)
.join(VisitModel)
.order_by(PatientModel.clinicID)
.filter(VisitModel.date == visitDate)
)
patients = patient_schema.dump(patients_query)
return patients, 200
def get(self, args):
"""Search for patients"""
if "fieldName" not in args:
only = ["id", "hn", "clinicID", "name", "nationality"]
patient_schema = PatientSchema(
many=True, exclude=PatientModel.relationship_keys, only=only
)
patients_query = (
PatientModel.query.order_by(PatientModel.clinicID)
.filter(
PatientModel.hn.ilike("%{}%".format(args["keyword"]))
| PatientModel.clinicID.ilike(
"%{}%".format(args["keyword"])
)
| PatientModel.napID.ilike("%{}%".format(args["keyword"]))
| PatientModel.name.ilike("%{}%".format(args["keyword"]))
)
.limit(current_app.config["MAX_NUMBER_OF_PATIENT_IN_SEARCH"])
.all()
)
else:
patient_schema = PatientSchema(
many=True,
exclude=PatientModel.relationship_keys,
only=[args["fieldName"]],
)
patients_query = (
PatientModel.query.filter(
getattr(PatientModel, args["fieldName"]).ilike(
"%{}%".format(args["keyword"])
)
)
.limit(current_app.config["MAX_NUMBER_OF_HOSPITAL_IN_SEARCH"])
.all()
)
patients = patient_schema.dump(patients_query)
return patients, 200
def patch(self, patient_uuid):
"""Modify patient with the UUID"""
patient_schema = PatientSchema(many=False)
patient_payload = parser.parse(PatientSchema, request)
patient_payload = patient_schema.dump(patient_payload)
patient = PatientModel.query.filter_by(id=patient_uuid).first()
if patient:
patient.update(**patient_payload)
db.session.add(patient)
db.session.commit()
return patient_schema.dump(patient), 200
else:
abort(404, "Patient not found.")