def test_distribution_composite_not_filled(self):
dist = Distribution(np.array([0, 1,
2]), ).opts(plot=dict(filled=False))
curve = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(curve, Curve)
self.assertEqual(curve.vdims,
[Dimension(('Value_density', 'Value Density'))])
def test_bivariate_composite_filled(self):
dist = Bivariate(np.random.rand(10, 2)).opts(plot=dict(filled=True))
contours = Compositor.collapse_element(dist)
self.assertIsInstance(contours, Polygons)
self.assertEqual(contours.vdims, [Dimension('Density')])
def test_bivariate_composite_transfer_opts_with_group(self):
dist = Bivariate(np.random.rand(10, 2), group='Test').opts(style=dict(cmap='Blues'))
contours = Compositor.collapse_element(dist)
opts = Store.lookup_options('matplotlib', contours, 'style').kwargs
self.assertEqual(opts.get('cmap', None), 'Blues')
def test_distribution_composite_transfer_opts_with_group(self):
dist = Distribution(np.array([0, 1, 2]), group='Test').opts(style=dict(color='red'))
area = Compositor.collapse_element(dist, backend='matplotlib')
opts = Store.lookup_options('matplotlib', area, 'style').kwargs
self.assertEqual(opts.get('color', None), 'red')
return results
from holoviews.core.options import Compositor
from .analysis import toHCS
#Default styles
options = Store.options(backend='matplotlib')
options.Image.Preference = Options('style', cmap='hsv')
options.Image.Selectivity = Options('style', cmap='gray')
options.Image.Activity = Options('style', cmap='gray')
options.Image.Response = Options('style', cmap='gray')
options.Image.FFT_Power = Options('style', cmap='gray')
# Default channel definitions
Compositor.register(
Compositor('Image.Orientation_Preference * Image.Orientation_Selectivity',
toHCS, 'OR PrefSel', mode='display', flipSC=True))
Compositor.register(
Compositor('Image.Direction_Preference * Image.Direction_Selectivity',
toHCS, 'DR PrefSel', mode='display', flipSC=True))
Compositor.register(
Compositor('Image.Orientation_Preference * Image.Activity',
toHCS, 'ORColoredResponse', mode='display', flipSC=True))
__all__ = [
"DistributionMatrix",
"FullMatrix",
"FeatureResponses",
FeatureMaps, ReverseCorrelation, MeasureResponseCommand, pattern_response,\
topo_metadata_fn, StorageHook, get_feature_preference
from topo.base.projection import Projection
from topo.base.sheet import Sheet
from topo.base.sheetview import CFView
from topo.misc.ipython import RunProgress
from topo.misc import color
from command import measure_cog
CoG_spec = "Image.X CoG * Image.Y CoG * Image.BlueChannel"
XYCoG = chain.instance(group='XYCoG', name='XYCoG',
operations = [image_overlay.instance(spec=CoG_spec), factory.instance()])
Compositor.register(Compositor("Image.X CoG * Image.Y CoG", XYCoG, 'XYCoG', 'display'))
import param
from holoviews import RGB, ElementOperation
from holoviews.operation.normalization import raster_normalization
class colorizeHSV(ElementOperation):
"""
Given an Overlay consisting of two Image elements, colorize the
data in the bottom Image with the data in the top Image using
the HSV color space.
"""
group = param.String(default='ColorizedHSV', doc="""
from holoviews.operation import gridmatrix
from .operation import regression
from holoviews.plotting.bokeh import CurvePlot
#unsure if necessary?
class Regression(hv.Curve):
group = param.String(default='Regression')
class RegressionPlot(CurvePlot):
"""
RegressionPlot visualizes a distribution of values as a trend in time.
"""
Compositor.register(
Compositor("Regression",
regression,
None,
'data',
transfer_options=True,
transfer_parameters=True,
output_type=hv.Curve,
backends=['bokeh', 'matplotlib']))
hv.Store.register({Regression: RegressionPlot}, 'bokeh')
hv.Store.set_current_backend('bokeh')
def test_bivariate_composite_empty_not_filled(self):
dist = Bivariate([]).opts(plot=dict(filled=True))
contours = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(contours, Contours)
self.assertEqual(contours.vdims, [Dimension('Density')])
self.assertEqual(len(contours), 0)
def test_bivariate_composite(self):
dist = Bivariate(np.random.rand(10, 2))
contours = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(contours, Contours)
self.assertEqual(contours.vdims, [Dimension('Density')])
def test_bivariate_composite_filled(self):
dist = Bivariate(np.random.rand(10, 2)).opts(plot=dict(filled=True))
contours = Compositor.collapse_element(dist)
self.assertIsInstance(contours, Polygons)
self.assertEqual(contours.vdims, [Dimension('Density')])
def test_bivariate_composite(self):
dist = Bivariate(np.random.rand(10, 2))
contours = Compositor.collapse_element(dist)
self.assertIsInstance(contours, Contours)
self.assertEqual(contours.vdims, [Dimension('Density')])
def test_distribution_composite_not_filled(self):
dist = Distribution(np.array([0, 1, 2])).opts(plot=dict(filled=False))
curve = Compositor.collapse_element(dist)
self.assertIsInstance(curve, Curve)
self.assertEqual(curve.vdims, [Dimension(('Value_density', 'Value Density'))])
FeatureMaps, ReverseCorrelation, MeasureResponseCommand, pattern_response,\
topo_metadata_fn, StorageHook, get_feature_preference
from topo.base.projection import Projection
from topo.base.sheet import Sheet
from topo.base.sheetview import CFView
from topo.misc.ipython import RunProgress
from topo.misc import color
from command import measure_cog
CoG_spec = "Image.X CoG * Image.Y CoG * Image.BlueChannel"
XYCoG = chain.instance(group='XYCoG', name='XYCoG',
operations = [image_overlay.instance(spec=CoG_spec), factory.instance()])
Compositor.register(Compositor("Image.X CoG * Image.Y CoG", XYCoG, 'XYCoG', 'display'))
import param
from holoviews import RGB, Image, ElementOperation
from holoviews.operation.normalization import raster_normalization
class colorizeHSV(ElementOperation):
"""
Given an Overlay consisting of two Image elements, colorize the
data in the bottom Image with the data in the top Image using
the HSV color space.
"""
group = param.String(default='ColorizedHSV', doc="""
_load_mpl()
else:
try:
from . import mpl # noqa
except ImportError:
pass
try:
from . import bokeh # noqa
except ImportError:
pass
Compositor.register(
Compositor("LineContours",
contours,
None,
'data',
transfer_options=True,
transfer_parameters=True,
output_type=Contours,
backends=['bokeh', 'matplotlib']))
Compositor.register(
Compositor("FilledContours",
contours.instance(filled=True),
None,
'data',
transfer_options=True,
transfer_parameters=True,
output_type=Polygons,
backends=['bokeh', 'matplotlib']))
def _load_mpl():
from . import mpl # noqa
extension.register_backend_callback('matplotlib', _load_mpl)
backends = Store.loaded_backends()
if 'bokeh' in backends:
_load_bokeh()
if 'matplotlib' in backends:
_load_mpl()
else:
try:
from . import mpl # noqa
except ImportError:
pass
try:
from . import bokeh # noqa
except ImportError:
pass
Compositor.register(Compositor("LineContours", contours, None,
'data', transfer_options=True,
transfer_parameters=True,
output_type=Contours,
backends=['bokeh', 'matplotlib']))
Compositor.register(Compositor("FilledContours", contours.instance(filled=True),
None, 'data', transfer_options=True,
transfer_parameters=True,
output_type=Polygons,
backends=['bokeh', 'matplotlib']))
def test_bivariate_composite_filled(self):
dist = Bivariate(np.random.rand(10, 2)).opts(plot=dict(filled=True))
contours = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(contours, Polygons)
self.assertEqual(contours.vdims[0].name, 'Density')
def test_bivariate_composite_filled(self):
dist = Bivariate(np.random.rand(10, 2)).opts(plot=dict(filled=True))
contours = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(contours, Polygons)
self.assertEqual(contours.vdims[0].name, 'Density')
"""
Applies hex binning by computing aggregates on a hexagonal grid.
Should not be user facing as the returned element is not directly
useable.
"""
def _process(self, element, key=None):
if isinstance(element, HexTiles):
element = project_points._process(self, element)
return hex_binning._process(self, element)
compositor = Compositor("HexTiles",
geo_hex_binning,
None,
'data',
output_type=HexTiles,
transfer_options=True,
transfer_parameters=True,
backends=['bokeh'])
Compositor.register(compositor)
Store.register(
{
WMTS: TilePlot,
Points: GeoPointPlot,
Labels: GeoLabelsPlot,
VectorField: GeoVectorFieldPlot,
Polygons: GeoPolygonPlot,
Contours: GeoContourPlot,
Rectangles: GeoRectanglesPlot,
Segments: GeoSegmentsPlot,
def test_distribution_composite_empty_not_filled(self):
dist = Distribution([]).opts(plot=dict(filled=False))
curve = Compositor.collapse_element(dist)
self.assertIsInstance(curve, Curve)
self.assertEqual(curve.vdims,
[Dimension(('Value_density', 'Value Density'))])
topo_metadata_fn, StorageHook, get_feature_preference
from topo.base.projection import Projection
from topo.base.sheet import Sheet
from topo.base.sheetview import CFView
from topo.misc.ipython import RunProgress
from topo.misc import color
from command import measure_cog
CoG_spec = "Image.X CoG * Image.Y CoG * Image.BlueChannel"
XYCoG = chain.instance(
group='XYCoG',
name='XYCoG',
operations=[image_overlay.instance(spec=CoG_spec),
factory.instance()])
Compositor.register(
Compositor("Image.X CoG * Image.Y CoG", XYCoG, 'XYCoG', 'display'))
import param
from holoviews import RGB, ElementOperation
from holoviews.operation.normalization import raster_normalization
class colorizeHSV(ElementOperation):
"""
Given an Overlay consisting of two Image elements, colorize the
data in the bottom Image with the data in the top Image using
the HSV color space.
"""
group = param.String(default='ColorizedHSV',
doc="""
def test_distribution_composite(self):
dist = Distribution(np.array([0, 1, 2]))
area = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(area, Area)
self.assertEqual(area.vdims, [Dimension(('Value_density', 'Density'))])
def test_distribution_composite_transfer_opts_with_group(self):
dist = Distribution(np.array([0, 1, 2]), group='Test').opts(style=dict(color='red'))
area = Compositor.collapse_element(dist, backend='matplotlib')
opts = Store.lookup_options('matplotlib', area, 'style').kwargs
self.assertEqual(opts.get('color', None), 'red')
def test_distribution_composite_custom_vdim(self):
dist = Distribution(np.array([0, 1, 2]), vdims=['Test'])
area = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(area, Area)
self.assertEqual(area.vdims, [Dimension('Test')])
def test_distribution_composite(self):
dist = Distribution(np.array([0, 1, 2]))
area = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(area, Area)
self.assertEqual(area.vdims, [Dimension(('Value_density', 'Value Density'))])
def test_distribution_composite_empty_not_filled(self):
dist = Distribution([]).opts(plot=dict(filled=False))
curve = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(curve, Curve)
self.assertEqual(curve.vdims, [Dimension(('Value_density', 'Density'))])
def test_distribution_composite_custom_vdim(self):
dist = Distribution(np.array([0, 1, 2]), vdims=['Test'])
area = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(area, Area)
self.assertEqual(area.vdims, [Dimension('Test')])
def test_bivariate_composite_transfer_opts_with_group(self):
dist = Bivariate(np.random.rand(10, 2), group='Test').opts(style=dict(cmap='Blues'))
contours = Compositor.collapse_element(dist, backend='matplotlib')
opts = Store.lookup_options('matplotlib', contours, 'style').kwargs
self.assertEqual(opts.get('cmap', None), 'Blues')
def test_bivariate_composite_custom_vdim(self):
dist = Bivariate(np.random.rand(10, 2), vdims=['Test'])
contours = Compositor.collapse_element(dist)
self.assertIsInstance(contours, Contours)
self.assertEqual(contours.vdims, [Dimension('Test')])
def test_bivariate_composite_custom_vdim(self):
dist = Bivariate(np.random.rand(10, 2), vdims=['Test'])
contours = Compositor.collapse_element(dist, backend='matplotlib')
self.assertIsInstance(contours, Contours)
self.assertEqual(contours.vdims, [Dimension('Test')])
def test_bivariate_composite_empty_not_filled(self):
dist = Bivariate([]).opts(plot=dict(filled=True))
contours = Compositor.collapse_element(dist)
self.assertIsInstance(contours, Contours)
self.assertEqual(contours.vdims, [Dimension('Density')])
self.assertEqual(len(contours), 0)
Applies hex binning by computing aggregates on a hexagonal grid.
Should not be user facing as the returned element is not directly
useable.
"""
def _process(self, element, key=None):
if isinstance(element, HexTiles):
element = project_points._process(self, element)
return hex_binning._process(self, element)
compositor = Compositor(
"HexTiles", geo_hex_binning, None, 'data', output_type=HexTiles,
transfer_options=True, transfer_parameters=True, backends=['bokeh']
)
Compositor.register(compositor)
Store.register({WMTS: TilePlot,
Points: GeoPointPlot,
Labels: GeoLabelsPlot,
VectorField: GeoVectorFieldPlot,
Polygons: GeoPolygonPlot,
Contours: GeoContourPlot,
Path: GeoPathPlot,
Shape: GeoShapePlot,
Image: GeoRasterPlot,
RGB: GeoRGBPlot,
LineContours: LineContourPlot,
FilledContours: FilledContourPlot,
Feature: FeaturePlot,