def get_model_file(job_id):
"""
Get the pdb file, created by the modeling job.
:param jobid: the job_id returned by 'submit'
:return: The pdb file created by the job. If the job status is not SUCCESS,
this method returns an error.
"""
from hommod.application import celery
result = celery.AsyncResult(job_id)
if result.status != 'SUCCESS':
return jsonify(
{'error': "{} has status {}".format(job_id, result.status)}), 400
try:
path = result.get()
except Exception:
return jsonify({'error': result.traceback}), 500
if path is None:
message = 'Job %s finished, but without creating a model. This could be due to lack of a suitable template.' % job_id
return jsonify({'error': message}), 500
try:
contents = model_storage.extract_model(path)
return Response(contents, mimetype='chemical/x-pdb')
except:
return jsonify({'error': traceback.format_exc()}), 500
def status(job_id):
"""
Request the status of a job.
:param jobid: the job id returned by 'submit'
:return: Either PENDING, STARTED, SUCCESS, FAILURE, RETRY, or REVOKED.
"""
from hommod.application import celery
result = celery.AsyncResult(job_id)
response = {'status': result.status}
if result.failed():
response['message'] = str(result.traceback)
return jsonify(response)
def get_metadata(job_id):
"""
Get the metadata of the model, created by the modeling job.
:param jobid: the job_id returned by 'submit'
:return: The json metadata object. If the job status is not SUCCESS,
this method returns an error.
"""
from hommod.application import celery
result = celery.AsyncResult(job_id)
if result.status != 'SUCCESS':
return jsonify(
{'error': "{} has status {}".format(job_id, result.status)}), 400
try:
path = result.get()
except Exception:
return jsonify({'error': result.traceback}), 500
if path is None:
message = 'Job %s finished, but without creating a model. This could be due to lack of a suitable template.' % job_id
return jsonify({'error': message}), 500
try:
data = {}
data['selected_targets'] = model_storage.extract_selected_targets(path)
data['alignments'] = [
alignment.as_dict()
for alignment in model_storage.extract_alignments(path)
]
return jsonify(data)
except:
return jsonify({'error': traceback.format_exc()}), 500
def result(job_id):
"""
Request whether a job has created a model or not.
:param jobid: the job id returned by 'submit'
:return: a json object containing the boolean field 'model_created'
"""
from hommod.application import celery
result = celery.AsyncResult(job_id)
if result.status != 'SUCCESS':
return jsonify(
{'error': "{} has status {}".format(job_id, result.status)}), 400
try:
path = result.get()
except:
return jsonify({'model_created': False})
if path is not None:
return jsonify({'model_created': True})
else:
return jsonify({'model_created': False})