def test_bin(pid):
#client = Client()
client = Filesystem(['../exampleData'])
catch = False
dir = os.path.join('stitch', ifcb.lid(pid))
try:
os.mkdir(dir)
except:
pass
unstitched = client.resolve(pid)
stitched = StitchedBin(unstitched)
print stitched
pairs = list(find_pairs(unstitched))
for target, ignore in pairs:
t = stitched.target(target)
print 'Got %s' % t
basename = ifcb.lid(t.pid)
t.image().save(os.path.join(dir, basename + '.png'), 'png')
t.mask().save(os.path.join(dir, basename + '_mask.png'), 'png')
t.stitch_raw().save(os.path.join(dir, basename + '_raw.png'), 'png')
def test_bin(pid):
#client = Client()
client = Filesystem(['../exampleData'])
catch = False
dir = os.path.join('stitch',ifcb.lid(pid))
try:
os.mkdir(dir)
except:
pass
unstitched = client.resolve(pid)
stitched = StitchedBin(unstitched)
print stitched
pairs = list(find_pairs(unstitched))
for target,ignore in pairs:
t = stitched.target(target)
print 'Got %s' % t
basename = ifcb.lid(t.pid)
t.image().save(os.path.join(dir,basename+'.png'),'png')
t.mask().save(os.path.join(dir,basename+'_mask.png'),'png')
t.stitch_raw().save(os.path.join(dir,basename+'_raw.png'),'png')
from config import FS_ROOTS
from ifcb.io.path import Filesystem
import mosaic
import sys
import ifcb
if __name__=='__main__':
if len(sys.argv) < 2:
print >> sys.stderr, 'usage: %s [pid] [outputfile]' % sys.argv[0]
else:
fs = Filesystem(FS_ROOTS)
b = fs.resolve(ifcb.pid(sys.argv[1]))
outfile = None
if len(sys.argv) > 2:
outfile = sys.argv[2]
print >> sys.stderr, 'Generating mosaic for %s' % str(b)
mosaic.save_mosaic(b,outfile)
if re.match(r'^\d{4}-\d{2}-\d{2}$',dates): # is it an unadorned yyyy-mm-dd?
date = time.strptime(dates+'UTC','%Y-%m-%d%Z') # assume midnight UTC
elif re.match(r'^\d{4}-\d{2}-\d{2}T\d{2}:\d{2}:\d{2}Z$',dates): # ISO 8601 in YYYY-mm-ddTHH:MM:SSZ?
date = time.strptime(re.sub('Z$','UTC',dates),'%Y-%m-%dT%H:%M:%S%Z') # parse
dayss = cgi.FieldStorage().getvalue('day',None)
if dayss is not None:
if re.match(r'^\d{4}-\d{2}-\d{2}$',dayss): # is it an unadorned yyyy-mm-dd?
date = time.strptime(dayss+'UTC','%Y-%m-%d%Z') # assume midnight UTC
elif re.match(r'^\d{4}-\d{3}$',dayss): # is it a julian day (yyyy-jjj)?
date = time.strptime(dayss+'UTC','%Y-%j%Z')
fs = Filesystem(FS_ROOTS)
if dayss is not None:
bin_ids = list(day_bins(date))
else:
bin_ids = list(latest_bins(size,date))
bins = [fs.resolve(pid) for pid in bin_ids]
mime = dict(atom='application/atom+xml', json='application/json', html='text/html', rss='application/rss+xml')[format]
headers = ['Content-type: %s' % mime,
'Cache-control: max-age=60',
'']
for h in headers:
print h
link = '.'.join([FEED,format])
if format == 'atom':
bins2atom(bins,link)
elif format == 'json':
bins2json_feed(bins)
elif format == 'rss':
bins2rss(bins,link)
elif format == 'html':
bins2html_feed(bins)
from config import FS_ROOTS
from ifcb.io.path import Filesystem
import mosaic
import sys
import ifcb
if __name__ == '__main__':
if len(sys.argv) < 2:
print >> sys.stderr, 'usage: %s [pid] [outputfile]' % sys.argv[0]
else:
fs = Filesystem(FS_ROOTS)
b = fs.resolve(ifcb.pid(sys.argv[1]))
outfile = None
if len(sys.argv) > 2:
outfile = sys.argv[2]
print >> sys.stderr, 'Generating mosaic for %s' % str(b)
mosaic.save_mosaic(b, outfile)
