def choose_segmentation_and_projection_channels(info):
dialog = NonBlockingGenericDialog("Select channels...")
channels = [info.ch1_label, info.ch2_label]
dialog.addRadioButtonGroup("Segmentation channel: ", channels, 1,
len(channels), channels[0])
dialog.addRadioButtonGroup("Projection channel: ", channels, 1,
len(channels), channels[1])
dialog.showDialog()
if dialog.wasCanceled():
return None
seg_ch = dialog.getNextRadioButton()
proj_ch = dialog.getNextRadioButton()
return channels.index(seg_ch), channels.index(proj_ch)
imp2 = IJ.getImage()
IJ.run(imp2, "Draw", "slice")
IJ.run("Select None")
if always_auto is True:
to_transport_channel()
average_max = high(bit_depth)
if always_auto is False:
if always_select is False:
nbgd = NonBlockingGenericDialog("Golgi_selection")
Methods = ['Automatic Selection', 'Manual Selection']
nbgd.addRadioButtonGroup("Methods", Methods, 2, 1, Methods[0])
nbgd.hideCancelButton()
nbgd.showDialog()
golgi_method = nbgd.getNextRadioButton()
if golgi_method == Methods[0]:
average_max = high(bit_depth)
elif golgi_method == Methods[1]:
to_golgi_channel()
IJ.setTool("polygon")
region = 'Select Golgi'
selection(region)
to_transport_channel()
average_max = high(bit_depth)
IJ.setForegroundColor(255, 255, 255)
IJ.setBackgroundColor(1, 1, 1)
imp2 = IJ.getImage()
IJ.run(imp2, "Draw", "slice")
IJ.run("Select None")