def snapshot(delay):
time.sleep(delay)
IJ.doCommand('Capture Screen')
def snapshot(delay):
time.sleep(delay)
IJ.doCommand('Capture Screen')
for roi in rois:
bounds = roi.getBounds()
x1 = (float(bounds.x) + float(bounds.x + bounds.width)) / 2.
y1 = (float(bounds.y) + float(bounds.y + bounds.height)) / 2.
fileh.write("\t".join([
roi.getName(),
str(x1),
str(y1),
str(bounds.width),
str(bounds.height)
]) + "\n")
fileh.close()
#Export overlay
IJ.doCommand("Flatten")
time.sleep(1)
ids = WindowManager.getIDList()
imp_overlay = None
print ids
for id_img in ids:
if imp.getID() != id_img:
imp_overlay = WindowManager.getImage(id_img)
break
if imp_overlay is None:
sys.exit(1)
fs = FileSaver(imp_overlay)
fs.saveAsJpeg(dirToSave + imp.getShortTitle() + "_cells.jpg")
imp_overlay.hide()
#commands = [c for c in ij.Menus.getCommands().keySet()]
# Above, equivalent list as below:
commands = Menus.getCommands().keySet().toArray()
gd = GenericDialog('Command Launcher')
gd.addStringField('Command: ', '');
prompt = gd.getStringFields().get(0)
prompt.setForeground(Color.red)
class TypeListener(TextListener):
def textValueChanged(self, tvc):
if prompt.getText() in commands:
prompt.setForeground(Color.black)
return
prompt.setForeground(Color.red)
# or loop:
#for c in commands:
# if c == text:
# prompt.setForeground(Color.black)
# return
#
#prompt.setForeground(Color.red)
prompt.addTextListener(TypeListener())
gd.showDialog()
if not gd.wasCanceled(): IJ.doCommand(gd.getNextString())
# This python version does not encapsulate the values of the variables, so they are all global when defined outside the class definition.
# In contrast, the lisp 'let' definitions encapsulates them in full
# As an advantage, each python script executes within its own namespace, whereas clojure scripts run all within a unique static interpreter.
