def preprocess(infile, outfile, separator, encoding, drop_columns):
"""
Preprocess device files
"""
loader = BaseLoader()
loader.preprocess(infile,
outfile,
encoding=encoding,
sep=separator,
drop_columns=drop_columns)
def preprocess(ctx, infile, outfile):
ndc_loader = BaseLoader()
# xforms performs transformations on the column names.
# If the value is callable, call it on the column value (key)
# Otherwise, just replace with the given value.
xforms = {
"Type": "te_type",
"drug_id": "ind_drug_id",
"status": "ind_status",
"phase": "ind_phase",
}
ndc_loader.preprocess(infile, outfile, column_xforms=xforms)
print(outfile)