Python set_context Beispiele

Beispiel #1

def test_set_context():
    st = Phosphorylation(Agent('MAP2K1'), Agent('MAPK3'))
    pa = PysbAssembler()
    pa.add_statements([st])
    pa.make_model()
    assert(pa.model.parameters['MAP2K1_0'].value == pa.default_initial_amount)
    assert(pa.model.parameters['MAPK3_0'].value == pa.default_initial_amount)
    pa.set_context('A375_SKIN')
    assert(pa.model.parameters['MAP2K1_0'].value > 10000)
    assert(pa.model.parameters['MAPK3_0'].value > 10000)

Beispiel #2

Datei: test_pysb_assembler.py Projekt: jmuhlich/indra

def test_set_context():
    st = Phosphorylation(Agent('MAP2K1'), Agent('MAPK3'))
    pa = PysbAssembler()
    pa.add_statements([st])
    pa.make_model()
    assert(pa.model.parameters['MAP2K1_0'].value == pa.default_initial_amount)
    assert(pa.model.parameters['MAPK3_0'].value == pa.default_initial_amount)
    pa.set_context('A375_SKIN')
    assert(pa.model.parameters['MAP2K1_0'].value > 10000)
    assert(pa.model.parameters['MAPK3_0'].value > 10000)

Beispiel #3

def test_set_context_monomer_notfound():
    st = Phosphorylation(Agent('MAP2K1'), Agent('XYZ'))
    pa = PysbAssembler()
    pa.add_statements([st])
    pa.make_model()
    assert(pa.model.parameters['MAP2K1_0'].value < 1000)
    assert(pa.model.parameters['XYZ_0'].value < 1000)
    pa.set_context('A375_SKIN')
    assert(pa.model.parameters['MAP2K1_0'].value > 10000)
    assert(pa.model.parameters['XYZ_0'].value < 1000)

Beispiel #4

def test_set_context_celltype_notfound():
    st = Phosphorylation(Agent('MAP2K1'), Agent('MAPK3'))
    pa = PysbAssembler()
    pa.add_statements([st])
    pa.make_model()
    pa.set_context('XYZ')

Beispiel #5

Datei: test_pysb_assembler.py Projekt: jmuhlich/indra

def test_set_context_celltype_notfound():
    st = Phosphorylation(Agent('MAP2K1'), Agent('MAPK3'))
    pa = PysbAssembler()
    pa.add_statements([st])
    pa.make_model()
    pa.set_context('XYZ')